Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60704
95 % 2 5 8348 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 21 35 223
70 % 23 44 132
50 % 30 56 130
40 % 33 65 126
30 % 46 95 105
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8741
95 % 2 5 8780 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 8698
70 % 9 20 699
50 % 19 33 284
40 % 21 39 255
30 % 21 39 272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WDD 1 A, E Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
2 1GK8 1 A, C, E, G RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
3 5IU0 1 A, B Ribulose bisphosphate carboxylase large chain 3702 4.1.1.39 | Details
4 3NWR 1 A A rubisco-like protein 134537
5 2V6A 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
6 3AXM 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
7 8RUC 1 A, C, E, G RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
8 1SVD 1 A ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 927 4.1.1.39 | Details
9 5RUB 1 A, B RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE) 1085 4.1.1.39 | Details
10 5WSK 1 A, B, C, D Ribulose bisphosphate carboxylase large chain 4565 4.1.1.39 | Details
11 1IR1 1 A, B, C, D Large subunit of Rubisco 3562 4.1.1.39 | Details
12 2OEM 1 A, B 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 1462 5.3.2.5 | Details
13 1IR2 1 A, B, C, D, E, F, G, H, S, T, U, V, W, X, Y, Z Large subunit of Rubisco 3055 4.1.1.39 | Details
14 5OYA 1 A, B, D, E, F, G, H Rubisco large subunit 163503
15 5OYA 2 C Rubisco large subunit 163503
16 5MZ2 1 A, B, C, D, E, F, G, H Rubisco large subunit 160265
17 5N9Z 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain 1234817 4.1.1.39 | Details
18 2OEK 1 A, B 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 1462 5.3.2.5 | Details
19 5HJX 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
20 2V63 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
21 2OEL 1 A, B 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 1462 5.3.2.5 | Details
22 3AXK 1 A, B Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
23 2D69 1 A, B, D, E Ribulose bisphosphate carboxylase 53953 4.1.1.39 | Details
24 4F0H 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
25 5HQM 1 A, B Ribulose bisphosphate carboxylase (R. palustris/R. rubrum chimera),Ribulose bisphosphate carboxylase 1085 4.1.1.39 | Details
26 1UW9 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
27 3RUB 1 L RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
28 2V67 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
29 4NAS 1 A, B, C, D Ribulose-bisphosphate carboxylase UNP residues 3-408 405212 4.1.1.39 | Details
30 2CWX 1 A, E Ribulose bisphosphate carboxylase 53953 4.1.1.39 | Details
31 5C2C 1 A, B, C Form II RubisCO 96
32 4F0K 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
33 4MKV 1 A, B, C, D Ribulose bisphosphate carboxylase large chain UNP residues 12-469 3888 4.1.1.39 | Details
34 1YKW 1 A, B RuBisCO-like protein 1097
35 3ZXW 1 A, C, E, G RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 146786 4.1.1.39 | Details
36 1UZH 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
37 5HAN 1 A, B, C, D, E, F, G, H, I, J, K, L Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
38 5HAT 1 A, B, C, D, E, F, G, H, I, J, K, L Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
39 4F0M 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
40 1RBO 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
41 3FK4 1 A, B RuBisCO-like protein 1396 5.3.2 | Details
42 3KDN 1 A, B, C, D, E, F, G, H, I, J Ribulose bisphosphate carboxylase 311400 4.1.1.39 | Details
43 2VDH 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
44 1UWA 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
45 2V68 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
46 1EJ7 1 L RUBISCO (LARGE SUBUNIT) 4097 4.1.1.39 | Details
47 1RBL 1 A, B, C, D, E, F, G, H RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 32046 4.1.1.39 | Details
48 5HAO 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
49 1BWV 1 A, C, E, G PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) THE ENZYME IS COMPLEXED WITH CARBON DIOXIDE, MG2+ AND REACTION INTERMEDIATE ANALOGUE, 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE. RESIDUE 201, KCX, OF THE LARGE SUBUNIT IS A LYS CARBAMYLATED AT THE EPSILON-AMINO GROUP 83374 4.1.1.39 | Details
50 4HHH 1 A, B, C, D Ribulose bisphosphate carboxylase large chain 3888 4.1.1.39 | Details
51 1RXO 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
52 5HJY 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
53 1AA1 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) 3562 4.1.1.39 | Details
54 2RUS 1 A, B RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE) 1085 4.1.1.39 | Details
55 1AUS 1 L, M, N, O RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
56 2YBV 1 A, C, E, G, I, K, M, O RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 146786 4.1.1.39 | Details
57 5HK4 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
58 2ZVI 1 A, B, C, D 2,3-diketo-5-methylthiopentyl-1-phosphate enolase Residues 10-414 1423 5.3.2 | Details
59 3A12 1 A, B, C, D, E, F, G, H, I, J Ribulose bisphosphate carboxylase 311400 4.1.1.39 | Details
60 5KOZ 1 A, B, C, D, E, F, G, H, I, J, K, L Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
61 1UZD 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
62 3WQP 1 A, B, C, D, E, F, G, H, I, J Ribulose bisphosphate carboxylase 311400 4.1.1.39 | Details
63 3A13 1 A, B, C, D, E, F, G, H, I, J Ribulose bisphosphate carboxylase 311400 4.1.1.39 | Details
64 4LF2 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
65 1IWA 1 A, C, E, G, I, K, M, O ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 83374 4.1.1.39 | Details
66 6FTL 1 A, C, E, G Ribulose bisphosphate carboxylase large chain 267567 4.1.1.39 | Details
67 1UPM 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3562 4.1.1.39 | Details
68 3KDO 1 A, B, C, D, E, F, G, H, I, J Ribulose bisphosphate carboxylase 311400 4.1.1.39 | Details
69 5C2G 1 A, B, C, D, E, F Form II RubisCO 96
70 1RCO 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
71 5MAC 1 A, B, C, D, E Ribulose-1,5-bisphosphate carboxylase-oxygenase type III 29291 4.1.1.39 | Details
72 1RCX 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
73 1RLD 1 A, B RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
74 9RUB 1 A, B RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE 1085 4.1.1.39 | Details
75 1RSC 1 A, B, C, D, E, F, G, H RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 32046 4.1.1.39 | Details
76 1RBA 1 A, B RUBISCO 1085 4.1.1.39 | Details
77 5HQL 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
78 1UPP 1 A, C, E, G RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3562 4.1.1.39 | Details
79 1RLC 1 L RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
80 2VDI 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
81 4RUB 1 A, B, C, D RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details
82 2OEJ 1 A, B 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 1462 5.3.2.5 | Details
83 2V69 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
84 1TEL 1 A, B ribulose bisphosphate carboxylase, large subunit 1097
85 4LF1 1 A, B, C, D, E, F Ribulose bisphosphate carboxylase 1076 4.1.1.39 | Details
86 6EKC 1 A1, A2, A3, A4, A5, A6, A7, A8, C1, C2, C3, C4, C5, C6, C7, C8, E1, E2, E3, E4, E5, E6, E7, E8, G1, G2, G3, G4, G5, G6, G7, G8, I1, I2, I3, I4, I5, I6, I7, I8, K1, K2, K3, K4, K5, K6, K7, K8, M1, M2, M3, M4, M5, M6, M7, M8, O1, O2, O3, O4, O5, O6, O7, O8, Q1, Q2, Q3, Q4, Q5, Q6, Q7, Q8, S1, S2, S3, S4, S5, S6, S7, S8 Ribulose bisphosphate carboxylase large chain RbcL 146786 4.1.1.39 | Details
87 1RUS 1 A, B RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE) 1085 4.1.1.39 | Details
88 1GEH 1 A, B, C, D, E RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE 311400 4.1.1.39 | Details
89 1BXN 1 A, C, E, G PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN) 106590 4.1.1.39 | Details
90 2QYG 1 A, B, C, D Ribulose bisphosphate carboxylase-like protein 2 1076
91 3RG6 1 A, B Ribulose bisphosphate carboxylase large chain 32046 4.1.1.39 | Details
92 2CXE 1 A, B, C, D Ribulose bisphosphate carboxylase 53953 4.1.1.39 | Details
93 6HBC 2 B, C Ribulose bisphosphate carboxylase large chain Rubisco large subunit 32046 4.1.1.39 | Details
94 5NV3 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain RbcL 1063 4.1.1.39 | Details
95 2WVW 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 32046 4.1.1.39 | Details