Sequence Similarity Clusters for the Entities in PDB 1EJ6

Entity #1 | Chains: A
LAMBDA2 protein, length: 1289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 33387
95 % 1 2 32486
90 % 1 2 26728
70 % 1 2 24137
50 % 1 2 20710
40 % 1 2 18289
30 % 1 2 15326
Entity #2 | Chains: B,C
LAMBDA1 protein, length: 1275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23279
95 % 1 2 20770 Flexibility: Medium
Max RMSD: 3.8, Avg RMSD: 3.8
PDBFlex
90 % 1 2 20162
70 % 1 2 18496
50 % 1 2 16034
40 % 1 2 14214
30 % 1 4 7262
Entity #3 | Chains: D,E
SIGMA2 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16265
95 % 1 2 15114
90 % 1 2 14814
70 % 1 2 13863
50 % 1 2 12257
40 % 1 2 11001
30 % 2 3 3333

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures