Sequence Similarity Clusters for the Entities in PDB 1EJ6

Entity #1 | Chains: A
LAMBDA2 protein, length: 1289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36378
95 % 1 2 29992
90 % 1 2 28765
70 % 1 2 25844
50 % 1 2 22146
40 % 1 2 19525
30 % 1 2 16362
Entity #2 | Chains: B,C
LAMBDA1 protein, length: 1275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24350
95 % 1 2 21745 Flexibility: Medium
Max RMSD: 3.8, Avg RMSD: 3.8
PDBFlex
90 % 1 2 21059
70 % 1 2 19242
50 % 1 2 16654
40 % 1 2 14750
30 % 1 7 2108
Entity #3 | Chains: D,E
SIGMA2 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17080
95 % 1 2 15832 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 15492
70 % 1 2 14435
50 % 1 2 12727
40 % 1 2 11409
30 % 2 3 3455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures