Sequence Similarity Clusters for the Entities in PDB 1EJ6

Entity #1 | Chains: A
LAMBDA2 protein, length: 1289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 34055
95 % 1 2 28280
90 % 1 2 27192
70 % 1 2 24526
50 % 1 2 21032
40 % 1 2 18557
30 % 1 2 15551
Entity #2 | Chains: B,C
LAMBDA1 protein, length: 1275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23722
95 % 1 2 21157 Flexibility: Medium
Max RMSD: 3.8, Avg RMSD: 3.8
PDBFlex
90 % 1 2 20523
70 % 1 2 18821
50 % 1 2 16303
40 % 1 2 14430
30 % 1 6 3072
Entity #3 | Chains: D,E
SIGMA2 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16587
95 % 1 2 15384 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 15063
70 % 1 2 14087
50 % 1 2 12453
40 % 1 2 11168
30 % 2 3 3392

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures