Sequence Similarity Clusters for the Entities in PDB 1EIY

Entity #1 | Chains: C
TRNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PHENYLALANYL-TRNA SYNTHETASE protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 7312
95 % 8 9 7890 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 8 9 7832
70 % 8 9 7614
50 % 8 9 7020
40 % 14 15 2943
30 % 14 15 2746
Entity #3 | Chains: B
PHENYLALANYL-TRNA SYNTHETASE protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5795
95 % 11 12 5474 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 11 12 5505
70 % 11 12 5407
50 % 11 12 5146
40 % 11 12 4857
30 % 19 20 2149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures