Sequence Similarity Clusters for the Entities in PDB 1EIY

Entity #1 | Chains: C
TRNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PHENYLALANYL-TRNA SYNTHETASE protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 7207
95 % 8 9 7778 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 8 9 7724
70 % 8 9 7510
50 % 8 9 6920
40 % 14 15 2913
30 % 14 15 2721
Entity #3 | Chains: B
PHENYLALANYL-TRNA SYNTHETASE protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5708
95 % 11 12 5399 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 11 12 5424
70 % 11 12 5333
50 % 11 12 5083
40 % 11 12 4805
30 % 19 20 2125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures