Sequence Similarity Clusters for the Entities in PDB 1EI3

Entity #1 | Chains: A,D
FIBRINOGEN protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31838
95 % 2 2 15629 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 2 2 15338
70 % 2 2 14386
50 % 2 2 12729
40 % 2 2 11527
30 % 2 2 10021
Entity #2 | Chains: B,E
FIBRINOGEN protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17244
95 % 2 2 15787 Flexibility: Medium
Max RMSD: 4.3, Avg RMSD: 3.5
PDBFlex
90 % 2 2 15485
70 % 2 2 14501
50 % 4 4 5980
40 % 4 4 5592
30 % 4 4 5030
Entity #3 | Chains: C,F
FIBRINOGEN protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33167
95 % 2 2 16106 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.6
PDBFlex
90 % 2 2 15798
70 % 2 2 14767
50 % 4 4 5065
40 % 4 4 4783
30 % 5 5 3406

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.