Sequence Similarity Clusters for the Entities in PDB 1EI3

Entity #1 | Chains: A,D
FIBRINOGEN protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32236
95 % 2 2 15817 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 2 2 15527
70 % 2 2 14561
50 % 2 2 12877
40 % 2 2 11653
30 % 2 2 10132
Entity #2 | Chains: B,E
FIBRINOGEN protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17468
95 % 2 2 15974 Flexibility: Medium
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 2 2 15673
70 % 2 2 14675
50 % 4 4 6053
40 % 4 4 5660
30 % 4 4 5088
Entity #3 | Chains: C,F
FIBRINOGEN protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33584
95 % 2 2 16297 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.6
PDBFlex
90 % 2 2 15991
70 % 2 2 14945
50 % 4 4 5132
40 % 4 4 4850
30 % 5 5 3443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures