Sequence Similarity Clusters for the Entities in PDB 1EGM

Entity #1 | Chains: A,L
PROPANEDIOL DEHYDRATASE protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4125
95 % 5 8 4469 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 8 4511
70 % 5 10 3384
50 % 5 10 3306
40 % 5 10 3191
30 % 5 10 2942
Entity #2 | Chains: B,E
PROPANEDIOL DEHYDRATASE protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4126
95 % 5 8 4470 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 8 4512
70 % 5 8 4407
50 % 5 8 4241
40 % 5 8 4016
30 % 5 8 3642
Entity #3 | Chains: G,M
PROPANEDIOL DEHYDRATASE protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4157
95 % 5 8 4499 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 5 8 4541
70 % 5 8 4431
50 % 5 8 4260
40 % 5 8 4033
30 % 5 8 3655

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures