Sequence Similarity Clusters for the Entities in PDB 1EGM

Entity #1 | Chains: A,L
PROPANEDIOL DEHYDRATASE protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 1926
95 % 8 11 2223 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 11 2277
70 % 8 13 1945
50 % 8 13 1981
40 % 8 13 1963
30 % 8 13 1875
Entity #2 | Chains: B,E
PROPANEDIOL DEHYDRATASE protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4245
95 % 5 8 4600 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 8 4641
70 % 5 8 4540
50 % 5 8 4351
40 % 5 8 4120
30 % 5 8 3730
Entity #3 | Chains: G,M
PROPANEDIOL DEHYDRATASE protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4275
95 % 5 8 4629 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 5 8 4669
70 % 5 8 4562
50 % 5 8 4371
40 % 5 8 4137
30 % 5 8 3744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures