Sequence Similarity Clusters for the Entities in PDB 1EGJ

Entity #1 | Chains: A
CYTOKINE RECEPTOR COMMON BETA CHAIN PRECURSOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47615
95 % 1 2 35585
90 % 1 2 33989
70 % 1 2 30215
50 % 1 2 25788
40 % 1 2 22721
30 % 1 2 19235
Entity #2 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61384
95 % 25 39 786 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 55 101 157
70 % 1659 2392 1
50 % 3362 4843 1
40 % 3362 4843 1
30 % 3945 5705 1
Entity #3 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60800
95 % 1 1 42726
90 % 1 1 40708
70 % 1619 2342 2
50 % 3363 4843 1
40 % 3363 4843 1
30 % 3946 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures