Sequence Similarity Clusters for the Entities in PDB 1EGJ

Entity #1 | Chains: A
CYTOKINE RECEPTOR COMMON BETA CHAIN PRECURSOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46929
95 % 1 2 35085
90 % 1 2 33532
70 % 1 2 29835
50 % 1 2 25468
40 % 1 2 22445
30 % 1 2 19003
Entity #2 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60531
95 % 25 39 767 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 54 99 154
70 % 1605 2327 1
50 % 3254 4713 1
40 % 3254 4713 1
30 % 3830 5567 1
Entity #3 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59960
95 % 1 1 42149
90 % 1 1 40184
70 % 1568 2280 2
50 % 3255 4713 1
40 % 3255 4713 1
30 % 3831 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.