Sequence Similarity Clusters for the Entities in PDB 1EGJ

Entity #1 | Chains: A
CYTOKINE RECEPTOR COMMON BETA CHAIN PRECURSOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41946
95 % 1 2 35223
90 % 1 2 33643
70 % 1 2 29987
50 % 1 2 25579
40 % 1 2 22464
30 % 1 2 18732
Entity #2 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61385
95 % 26 40 782 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 58 108 147
70 % 1739 2516 1
50 % 3532 5101 1
40 % 4004 5750 1
30 % 4975 7168 1
Entity #3 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61386
95 % 1 1 49986
90 % 1 1 47434
70 % 1706 2475 2
50 % 3533 5101 1
40 % 4005 5750 1
30 % 4976 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures