Sequence Similarity Clusters for the Entities in PDB 1EGD

Entity #1 | Chains: A,B,C,D
MEDIUM CHAIN ACYL-COA DEHYDROGENASE protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 3846
95 % 2 6 2758 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 6 2823
70 % 5 9 1916
50 % 5 9 1947
40 % 25 35 500
30 % 45 63 272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures