Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 274 30
95 % 278 279 38
90 % 278 279 43
70 % 278 279 53
50 % 426 428 25
40 % 431 433 34
30 % 431 433 54
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29219
95 % 1 3 24223
90 % 1 3 23450
70 % 8 10 7043
50 % 142 144 233
40 % 142 144 254
30 % 144 146 262
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 953
95 % 90 90 266
90 % 91 91 279
70 % 91 91 315
50 % 144 144 231
40 % 144 144 252
30 % 196 196 207
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6454
95 % 9 10 7055
90 % 9 10 7024
70 % 13 14 4662
50 % 208 209 113
40 % 347 348 70
30 % 529 530 35
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 2505
95 % 21 21 2805
90 % 21 21 2847
70 % 24 24 2371
50 % 229 229 137
40 % 232 232 151
30 % 235 235 164
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22123
95 % 1 4 19100
90 % 1 4 18597
70 % 1 4 17173
50 % 1 4 14939
40 % 1 4 13303
30 % 1 4 11381
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22311
95 % 2 4 19257
90 % 2 4 18746
70 % 9 11 6182
50 % 415 417 30
40 % 415 417 42
30 % 417 419 60
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 275 276 27
95 % 281 282 37
90 % 281 282 42
70 % 281 282 51
50 % 281 282 88
40 % 281 282 110
30 % 354 355 95
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 275 28
95 % 274 276 41
90 % 274 276 46
70 % 274 276 56
50 % 354 356 66
40 % 359 361 84
30 % 359 361 96
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 271 32
95 % 270 271 45
90 % 274 275 47
70 % 274 275 57
50 % 420 421 27
40 % 426 427 37
30 % 541 542 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.