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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
1EG0
Sequence Clusters for the Sequence Entities in PDB 1EG0
Entity #1: Chains: I - FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: F - PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 198 21
95% 202 203 30
90% 202 203 31
70% 202 203 43
50% 280 282 32
40% 280 282 42
30% 280 282 67
Entity #11: Chains: G - PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22620
95% 1 3 18913
90% 1 3 18355
70% 1 3 16891
50% 75 77 300
40% 75 77 324
30% 77 79 336
Entity #12: Chains: H - PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: N - PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 12 2471
95% 68 68 273
90% 69 69 281
70% 69 69 303
50% 107 107 228
40% 107 107 257
30% 144 144 205
Entity #14: Chains: J - PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 10 4805
95% 9 10 5411
90% 9 10 5419
70% 11 12 4415
50% 122 123 133
40% 200 201 79
30% 318 319 48
Entity #15: Chains: K - PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 19 1853
95% 21 21 2100
90% 21 21 2131
70% 23 23 1964
50% 156 156 120
40% 159 159 147
30% 161 161 169
Entity #2: Chains: L - FRAGMENT OF 23S RRNA rna, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: M - HELIX 95 OF 23S RRNA rna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - FORMYL-METHIONYL-TRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: A - PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 17060
95% 1 4 14938
90% 1 4 14578
70% 1 4 13561
50% 1 4 11896
40% 1 4 10650
30% 1 4 9182
Entity #6: Chains: B - PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17209
95% 2 4 15063
90% 2 4 14700
70% 2 4 13664
50% 271 273 36
40% 271 273 48
30% 273 275 70
Entity #7: Chains: C - PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 200 17
95% 205 206 29
90% 205 206 30
70% 205 206 40
50% 205 206 80
40% 205 206 105
30% 242 243 90
Entity #8: Chains: D - PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 199 20
95% 198 200 33
90% 198 200 34
70% 198 200 47
50% 239 241 54
40% 240 242 70
30% 240 242 94
Entity #9: Chains: E - PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 195 22
95% 194 195 38
90% 198 199 35
70% 198 199 48
50% 274 275 35
40% 276 277 46
30% 326 327 43
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.