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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
1EG0
Sequence Clusters for the Sequence Entities in PDB 1EG0
Entity #1: Chains: I - FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: F - PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 257 258 21
95% 262 263 35
90% 262 263 37
70% 262 263 48
50% 374 376 32
40% 374 376 45
30% 374 376 69
Entity #11: Chains: G - PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21858
95% 1 3 18304
90% 1 3 17775
70% 1 3 16353
50% 109 111 291
40% 109 111 315
30% 111 113 324
Entity #12: Chains: H - PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: N - PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 13 2311
95% 90 90 301
90% 91 91 315
70% 91 91 338
50% 128 128 240
40% 128 128 269
30% 170 170 210
Entity #14: Chains: J - PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 10 4603
95% 9 10 5190
90% 9 10 5202
70% 11 12 4226
50% 182 183 147
40% 291 292 85
30% 396 397 61
Entity #15: Chains: K - PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 19 1708
95% 21 21 1962
90% 21 21 1993
70% 23 23 1835
50% 196 196 127
40% 199 199 155
30% 201 201 178
Entity #2: Chains: L - FRAGMENT OF 23S RRNA rna, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: M - HELIX 95 OF 23S RRNA rna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - FORMYL-METHIONYL-TRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: A - PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 16463
95% 1 4 14450
90% 1 4 14109
70% 1 4 13138
50% 1 4 11532
40% 1 4 10323
30% 1 4 8925
Entity #6: Chains: B - PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16610
95% 2 4 14573
90% 2 4 14231
70% 2 4 13242
50% 365 367 37
40% 365 367 51
30% 367 369 72
Entity #7: Chains: C - PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 259 260 18
95% 265 266 34
90% 265 266 36
70% 265 266 47
50% 265 266 88
40% 265 266 112
30% 312 313 94
Entity #8: Chains: D - PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 257 259 20
95% 258 260 37
90% 258 260 39
70% 258 260 51
50% 306 308 57
40% 307 309 73
30% 307 309 97
Entity #9: Chains: E - PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 255 23
95% 254 255 41
90% 258 259 40
70% 258 259 52
50% 368 369 36
40% 370 371 49
30% 407 408 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.