Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 272 30
95 % 276 277 39
90 % 276 277 43
70 % 276 277 55
50 % 404 406 27
40 % 407 409 36
30 % 407 409 56
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28070
95 % 1 3 23250
90 % 1 3 22524
70 % 3 5 13056
50 % 125 127 252
40 % 125 127 273
30 % 127 129 276
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 923
95 % 90 90 257
90 % 91 91 266
70 % 91 91 298
50 % 138 138 233
40 % 138 138 258
30 % 190 190 206
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6160
95 % 9 10 6731
90 % 9 10 6709
70 % 12 13 4782
50 % 193 194 118
40 % 322 323 71
30 % 500 501 34
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 2399
95 % 21 21 2705
90 % 21 21 2750
70 % 24 24 2282
50 % 217 217 140
40 % 220 220 154
30 % 223 223 168
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 21206
95 % 1 4 18305
90 % 1 4 17839
70 % 1 4 16526
50 % 1 4 14421
40 % 1 4 12847
30 % 1 4 11001
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21388
95 % 2 4 18456
90 % 2 4 17982
70 % 4 6 11185
50 % 396 398 31
40 % 396 398 43
30 % 398 400 59
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 274 27
95 % 279 280 36
90 % 279 280 41
70 % 279 280 52
50 % 279 280 87
40 % 279 280 106
30 % 333 334 90
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 273 28
95 % 272 274 41
90 % 272 274 45
70 % 272 274 56
50 % 336 338 71
40 % 339 341 79
30 % 339 341 93
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 269 33
95 % 268 269 46
90 % 272 273 46
70 % 272 273 57
50 % 398 399 29
40 % 402 403 38
30 % 511 512 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.