Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 250 28
95 % 254 255 34
90 % 254 255 39
70 % 254 255 49
50 % 346 348 26
40 % 347 349 37
30 % 347 349 56
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25604
95 % 1 3 21275
90 % 1 3 20619
70 % 2 4 16035
50 % 89 91 303
40 % 89 91 325
30 % 91 93 336
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 23 1007
95 % 84 84 224
90 % 85 85 233
70 % 85 85 268
50 % 130 130 211
40 % 130 130 234
30 % 173 173 201
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 5522
95 % 9 10 6119
90 % 9 10 6100
70 % 12 13 4358
50 % 176 177 117
40 % 274 275 59
30 % 412 413 42
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 2124
95 % 21 21 2384
90 % 21 21 2426
70 % 24 24 2032
50 % 183 183 150
40 % 186 186 164
30 % 189 189 179
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 19320
95 % 1 4 16771
90 % 1 4 16345
70 % 1 4 15168
50 % 1 4 13280
40 % 1 4 11871
30 % 1 4 10197
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19483
95 % 2 4 16909
90 % 2 4 16478
70 % 3 5 11650
50 % 337 339 32
40 % 337 339 43
30 % 339 341 58
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 252 25
95 % 257 258 33
90 % 257 258 37
70 % 257 258 48
50 % 257 258 84
40 % 257 258 103
30 % 296 297 80
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 251 26
95 % 250 252 37
90 % 250 252 42
70 % 250 252 51
50 % 295 297 51
40 % 296 298 63
30 % 296 298 89
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 247 30
95 % 246 247 41
90 % 250 251 43
70 % 250 251 52
50 % 340 341 31
40 % 342 343 40
30 % 411 412 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.