POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
1EG0
Sequence Clusters for the Sequence Entities in PDB 1EG0
Entity #1: Chains: I - FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: F - PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 192 21
95% 196 197 33
90% 196 197 35
70% 196 197 47
50% 274 276 32
40% 274 276 43
30% 274 276 66
Entity #11: Chains: G - PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22450
95% 1 3 18778
90% 1 3 18225
70% 1 3 16774
50% 75 77 296
40% 75 77 320
30% 77 79 328
Entity #12: Chains: H - PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: N - PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 12 2444
95% 64 64 299
90% 65 65 313
70% 65 65 333
50% 103 103 245
40% 103 103 277
30% 140 140 206
Entity #14: Chains: J - PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 10 4762
95% 9 10 5357
90% 9 10 5367
70% 11 12 4376
50% 116 117 141
40% 194 195 80
30% 311 312 53
Entity #15: Chains: K - PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 19 1835
95% 21 21 2086
90% 21 21 2115
70% 23 23 1947
50% 152 152 123
40% 155 155 149
30% 157 157 174
Entity #2: Chains: L - FRAGMENT OF 23S RRNA rna, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: M - HELIX 95 OF 23S RRNA rna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - FORMYL-METHIONYL-TRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: A - PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 16926
95% 1 4 14828
90% 1 4 14469
70% 1 4 13460
50% 1 4 11818
40% 1 4 10581
30% 1 4 9133
Entity #6: Chains: B - PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17073
95% 2 4 14951
90% 2 4 14589
70% 2 4 13563
50% 265 267 36
40% 265 267 49
30% 267 269 72
Entity #7: Chains: C - PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 194 19
95% 199 200 29
90% 199 200 30
70% 199 200 45
50% 199 200 86
40% 199 200 108
30% 236 237 93
Entity #8: Chains: D - PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 193 20
95% 192 194 36
90% 192 194 38
70% 192 194 50
50% 233 235 56
40% 234 236 73
30% 234 236 96
Entity #9: Chains: E - PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 189 22
95% 188 189 40
90% 192 193 39
70% 192 193 51
50% 268 269 35
40% 270 271 46
30% 320 321 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.