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An Information Portal to 111749 Biological Macromolecular Structures

FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
1EG0
Sequence Clusters for the Sequence Entities in PDB 1EG0
Entity #1: Chains: I - FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: F - PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 222 29
95% 226 227 36
90% 226 227 40
70% 226 227 52
50% 311 313 29
40% 312 314 39
30% 312 314 54
Entity #11: Chains: G - PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23999
95% 1 3 19999
90% 1 3 19387
70% 2 4 15147
50% 82 84 299
40% 82 84 329
30% 84 86 332
Entity #12: Chains: H - PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: N - PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 15 1761
95% 75 75 263
90% 76 76 267
70% 76 76 293
50% 116 116 220
40% 116 116 246
30% 158 158 205
Entity #14: Chains: J - PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 10 5144
95% 9 10 5761
90% 9 10 5751
70% 12 13 4110
50% 147 148 128
40% 232 233 70
30% 360 361 48
Entity #15: Chains: K - PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 19 1980
95% 21 21 2234
90% 21 21 2266
70% 24 24 1903
50% 165 165 146
40% 168 168 157
30% 171 171 174
Entity #2: Chains: L - FRAGMENT OF 23S RRNA rna, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: M - HELIX 95 OF 23S RRNA rna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - FORMYL-METHIONYL-TRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: A - PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 18117
95% 1 4 15798
90% 1 4 15393
70% 1 4 14315
50% 1 4 12550
40% 1 4 11242
30% 1 4 9668
Entity #6: Chains: B - PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18268
95% 2 4 15926
90% 2 4 15518
70% 3 5 10992
50% 302 304 37
40% 302 304 47
30% 304 306 63
Entity #7: Chains: C - PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 224 25
95% 229 230 24
90% 229 230 29
70% 229 230 41
50% 229 230 83
40% 229 230 108
30% 268 269 80
Entity #8: Chains: D - PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 223 27
95% 222 224 40
90% 222 224 44
70% 222 224 54
50% 265 267 51
40% 266 268 64
30% 266 268 83
Entity #9: Chains: E - PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 31
95% 218 219 44
90% 222 223 45
70% 222 223 55
50% 305 306 35
40% 307 308 43
30% 372 373 37
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.