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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
1EG0
Sequence Clusters for the Sequence Entities in PDB 1EG0
Entity #1: Chains: I - FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: F - PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 262 263 20
95% 267 268 35
90% 267 268 37
70% 267 268 48
50% 379 381 32
40% 379 381 43
30% 379 381 68
Entity #11: Chains: G - PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21966
95% 1 3 18396
90% 1 3 17865
70% 1 3 16428
50% 109 111 291
40% 109 111 316
30% 111 113 324
Entity #12: Chains: H - PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: N - PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 13 2321
95% 92 92 297
90% 93 93 308
70% 93 93 330
50% 130 130 240
40% 130 130 265
30% 172 172 206
Entity #14: Chains: J - PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 10 4632
95% 9 10 5223
90% 9 10 5236
70% 11 12 4250
50% 187 188 144
40% 296 297 84
30% 401 402 60
Entity #15: Chains: K - PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 19 1720
95% 21 21 1968
90% 21 21 2000
70% 23 23 1845
50% 199 199 127
40% 202 202 152
30% 204 204 173
Entity #2: Chains: L - FRAGMENT OF 23S RRNA rna, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: M - HELIX 95 OF 23S RRNA rna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - FORMYL-METHIONYL-TRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: A - PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 16550
95% 1 4 14528
90% 1 4 14186
70% 1 4 13205
50% 1 4 11587
40% 1 4 10376
30% 1 4 8965
Entity #6: Chains: B - PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16698
95% 2 4 14652
90% 2 4 14308
70% 2 4 13309
50% 370 372 37
40% 370 372 50
30% 372 374 72
Entity #7: Chains: C - PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 264 265 18
95% 270 271 33
90% 270 271 35
70% 270 271 47
50% 270 271 87
40% 270 271 112
30% 317 318 94
Entity #8: Chains: D - PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 262 264 19
95% 263 265 37
90% 263 265 39
70% 263 265 49
50% 311 313 56
40% 312 314 72
30% 312 314 96
Entity #9: Chains: E - PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 259 260 21
95% 259 260 40
90% 263 264 40
70% 263 264 50
50% 373 374 35
40% 375 376 47
30% 412 413 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.