Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 299 300 27
95 % 302 303 36
90 % 302 303 40
70 % 302 303 52
50 % 468 470 26
40 % 473 475 37
30 % 473 475 55
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29276
95 % 1 3 25575
90 % 1 3 24689
70 % 11 13 5038
50 % 159 161 227
40 % 159 161 252
30 % 161 163 266
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 26 1446
95 % 95 95 277
90 % 96 96 286
70 % 96 96 331
50 % 155 155 231
40 % 155 155 257
30 % 210 210 218
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 7055
95 % 9 10 7183
90 % 9 10 7155
70 % 13 14 4848
50 % 230 231 114
40 % 383 384 60
30 % 583 584 40
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2567
95 % 21 21 2883
90 % 21 21 2943
70 % 24 24 2512
50 % 238 238 152
40 % 241 241 164
30 % 244 244 176
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 23375
95 % 1 4 20084
90 % 1 4 20220
70 % 1 4 18553
50 % 1 4 16091
40 % 1 4 14255
30 % 1 4 11966
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23604
95 % 2 4 21011
90 % 2 4 20386
70 % 12 14 4668
50 % 457 459 31
40 % 457 459 44
30 % 459 461 61
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 299 300 28
95 % 305 306 35
90 % 305 306 39
70 % 305 306 50
50 % 305 306 91
40 % 305 306 113
30 % 394 395 88
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 298 300 29
95 % 298 300 38
90 % 298 300 42
70 % 298 300 53
50 % 395 397 56
40 % 401 403 72
30 % 401 403 87
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 295 35
95 % 294 295 43
90 % 298 299 43
70 % 298 299 54
50 % 462 463 27
40 % 606 607 18
30 % 606 607 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures