Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 273 30
95 % 277 278 38
90 % 277 278 43
70 % 277 278 54
50 % 423 425 25
40 % 428 430 35
30 % 428 430 54
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28694
95 % 1 3 23779
90 % 1 3 23024
70 % 8 10 6891
50 % 141 143 231
40 % 141 143 253
30 % 143 145 259
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 939
95 % 90 90 263
90 % 91 91 275
70 % 91 91 305
50 % 144 144 229
40 % 144 144 252
30 % 196 196 204
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6345
95 % 9 10 6924
90 % 9 10 6895
70 % 13 14 4576
50 % 204 205 115
40 % 342 343 70
30 % 521 522 36
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 2466
95 % 21 21 2765
90 % 21 21 2807
70 % 24 24 2324
50 % 228 228 136
40 % 231 231 149
30 % 234 234 164
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 21709
95 % 1 4 18724
90 % 1 4 18235
70 % 1 4 16883
50 % 1 4 14700
40 % 1 4 13086
30 % 1 4 11200
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21893
95 % 2 4 18878
90 % 2 4 18381
70 % 9 11 6069
50 % 413 415 29
40 % 413 415 42
30 % 415 417 60
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 275 27
95 % 280 281 37
90 % 280 281 41
70 % 280 281 52
50 % 280 281 88
40 % 280 281 109
30 % 351 352 93
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 274 28
95 % 273 275 41
90 % 273 275 46
70 % 273 275 57
50 % 351 353 68
40 % 356 358 85
30 % 356 358 95
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 270 32
95 % 269 270 46
90 % 273 274 47
70 % 273 274 58
50 % 417 418 27
40 % 423 424 37
30 % 534 535 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.