Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 286 287 29
95 % 291 292 36
90 % 291 292 41
70 % 291 292 51
50 % 451 453 26
40 % 456 458 36
30 % 456 458 55
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30300
95 % 1 3 25076
90 % 1 3 24244
70 % 11 13 4946
50 % 153 155 230
40 % 153 155 248
30 % 155 157 255
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 1006
95 % 92 92 276
90 % 93 93 288
70 % 93 93 328
50 % 149 149 235
40 % 149 149 253
30 % 202 202 209
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6703
95 % 9 10 7315
90 % 9 10 7281
70 % 13 14 4855
50 % 218 219 115
40 % 362 363 68
30 % 553 554 39
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 2641
95 % 21 21 2929
90 % 21 21 2967
70 % 24 24 2485
50 % 232 232 147
40 % 235 235 158
30 % 238 238 166
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22984
95 % 1 4 19772
90 % 1 4 19239
70 % 1 4 17770
50 % 1 4 15425
40 % 1 4 13719
30 % 1 4 11742
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23176
95 % 2 4 19933
90 % 2 4 19394
70 % 12 14 4513
50 % 439 441 32
40 % 439 441 44
30 % 441 443 61
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 289 26
95 % 294 295 35
90 % 294 295 39
70 % 294 295 48
50 % 294 295 88
40 % 294 295 110
30 % 377 378 86
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 286 288 27
95 % 287 289 38
90 % 287 289 44
70 % 287 289 53
50 % 378 380 64
40 % 383 385 75
30 % 383 385 90
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 284 31
95 % 283 284 43
90 % 287 288 45
70 % 287 288 54
50 % 445 446 28
40 % 451 452 39
30 % 576 577 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures