Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 319 320 25
95 % 322 323 38
90 % 322 323 43
70 % 322 323 53
50 % 504 506 22
40 % 509 511 33
30 % 509 511 52
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30614
95 % 1 3 26722
90 % 1 3 25753
70 % 13 15 4574
50 % 170 172 228
40 % 170 172 254
30 % 172 174 268
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 30 1327
95 % 97 97 285
90 % 98 98 292
70 % 98 98 342
50 % 159 159 243
40 % 159 159 272
30 % 226 226 218
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 7442
95 % 9 10 7553
90 % 9 10 7497
70 % 15 16 4383
50 % 253 254 109
40 % 418 419 54
30 % 632 633 39
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2706
95 % 21 21 3030
90 % 21 21 3089
70 % 24 24 2634
50 % 253 253 155
40 % 256 256 163
30 % 259 259 180
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 25795
95 % 1 4 22864
90 % 1 4 22125
70 % 1 4 16060
50 % 1 4 14073
40 % 1 4 12593
30 % 1 4 10669
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24695
95 % 2 4 22017
90 % 2 4 21319
70 % 14 16 4190
50 % 488 490 30
40 % 488 490 41
30 % 490 492 59
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 319 320 26
95 % 325 326 36
90 % 325 326 42
70 % 325 326 52
50 % 325 326 91
40 % 325 326 109
30 % 429 430 82
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 318 320 27
95 % 318 320 40
90 % 318 320 45
70 % 318 320 55
50 % 431 433 51
40 % 437 439 68
30 % 437 439 81
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 314 315 32
95 % 314 315 46
90 % 318 319 46
70 % 318 319 56
50 % 498 499 23
40 % 658 659 19
30 % 658 659 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures