Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 274 30
95 % 278 279 38
90 % 278 279 43
70 % 278 279 55
50 % 436 438 25
40 % 441 443 36
30 % 441 443 55
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29652
95 % 1 3 24572
90 % 1 3 23779
70 % 11 13 4832
50 % 151 153 228
40 % 151 153 247
30 % 153 155 253
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 978
95 % 90 90 274
90 % 91 91 286
70 % 91 91 322
50 % 146 146 237
40 % 146 146 258
30 % 198 198 211
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6556
95 % 9 10 7162
90 % 9 10 7125
70 % 13 14 4736
50 % 212 213 119
40 % 354 355 70
30 % 536 537 37
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 2562
95 % 21 21 2856
90 % 21 21 2898
70 % 24 24 2401
50 % 229 229 145
40 % 232 232 155
30 % 235 235 166
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22437
95 % 1 4 19358
90 % 1 4 18855
70 % 1 4 17401
50 % 1 4 15125
40 % 1 4 13464
30 % 1 4 11529
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22628
95 % 2 4 19516
90 % 2 4 19005
70 % 12 14 4417
50 % 424 426 30
40 % 424 426 44
30 % 426 428 61
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 275 276 27
95 % 281 282 37
90 % 281 282 42
70 % 281 282 53
50 % 281 282 91
40 % 281 282 114
30 % 364 365 92
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 275 28
95 % 274 276 42
90 % 274 276 46
70 % 274 276 57
50 % 364 366 66
40 % 369 371 83
30 % 369 371 94
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 271 32
95 % 270 271 46
90 % 274 275 47
70 % 274 275 58
50 % 430 431 27
40 % 436 437 38
30 % 554 555 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.