Sequence Similarity Clusters for the Entities in PDB 1EG0

Entity #1 | Chains: I
FRAGMENT OF 16S RRNA HELIX 23 rna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
PROTEIN (S15 RIBOSOMAL PROTEIN) protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 308 309 27
95 % 311 312 37
90 % 311 312 41
70 % 311 312 52
50 % 488 490 25
40 % 493 495 35
30 % 493 495 56
Entity #11 | Chains: G
PROTEIN (S17 RIBOSOMAL PROTEIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29963
95 % 1 3 26162
90 % 1 3 25232
70 % 13 15 4467
50 % 169 171 224
40 % 169 171 251
30 % 171 173 259
Entity #12 | Chains: H
PROTEIN (S20 RIBOSOMAL PROTEIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: N
PROTEIN (RIBOSOMAL PROTEIN L1) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 30 1271
95 % 97 97 279
90 % 98 98 287
70 % 98 98 333
50 % 159 159 235
40 % 159 159 261
30 % 216 216 218
Entity #14 | Chains: J
PROTEIN (RIBOSOMAL PROTEIN L6) protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 7240
95 % 9 10 7360
90 % 9 10 7315
70 % 15 16 4282
50 % 236 237 111
40 % 399 400 59
30 % 602 603 40
Entity #15 | Chains: K
PROTEIN (RIBOSOMAL PROTEIN L11) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2644
95 % 21 21 2961
90 % 21 21 3019
70 % 24 24 2573
50 % 246 246 151
40 % 249 249 164
30 % 252 252 175
Entity #2 | Chains: L
FRAGMENT OF 23S RRNA rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: M
HELIX 95 OF 23S RRNA rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: O
FORMYL-METHIONYL-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
PROTEIN (S4 RIBOSOMAL PROTEIN) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 23950
95 % 1 4 20603
90 % 1 4 20716
70 % 1 4 18961
50 % 1 4 16418
40 % 1 4 14536
30 % 1 4 12227
Entity #6 | Chains: B
PROTEIN (S5 RIBOSOMAL PROTEIN) protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24176
95 % 2 4 21547
90 % 2 4 20881
70 % 14 16 4097
50 % 476 478 32
40 % 476 478 42
30 % 478 480 61
Entity #7 | Chains: C
PROTEIN (S6 RIBOSOMAL PROTEIN) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 308 309 28
95 % 314 315 36
90 % 314 315 40
70 % 314 315 51
50 % 314 315 92
40 % 314 315 112
30 % 413 414 87
Entity #8 | Chains: D
PROTEIN (S7 RIBOSOMAL PROTEIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 307 309 29
95 % 307 309 39
90 % 307 309 43
70 % 307 309 53
50 % 415 417 60
40 % 421 423 64
30 % 421 423 80
Entity #9 | Chains: E
PROTEIN (S8 RIBOSOMAL PROTEIN) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 303 304 34
95 % 303 304 44
90 % 307 308 44
70 % 307 308 54
50 % 482 483 27
40 % 629 630 19
30 % 629 630 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures