Sequence Similarity Clusters for the Entities in PDB 1EFX

Entity #1 | Chains: A
HLA-CW3 (HEAVY CHAIN) protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56216
95 % 10 10 4337
90 % 192 200 132
70 % 636 688 6
50 % 638 693 6
40 % 680 743 10
30 % 766 861 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 545 596 2
95 % 586 640 3
90 % 595 649 4
70 % 789 879 4
50 % 804 901 3
40 % 804 907 9
30 % 804 901 14
Entity #3 | Chains: C
PEPTIDE FROM IMPORTIN ALPHA-2 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
NATURAL KILLER CELL RECEPTOR KIR2DL2 protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 21323
95 % 3 5 10397
90 % 4 6 9163
70 % 5 7 7453
50 % 6 8 5754
40 % 18 24 1640
30 % 23 31 1236

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.