Sequence Similarity Clusters for the Entities in PDB 1EFX

Entity #1 | Chains: A
HLA-CW3 (HEAVY CHAIN) protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57376
95 % 10 10 4685 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 201 209 137
70 % 679 746 6
50 % 690 760 7
40 % 730 812 9
30 % 824 939 13
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 608 675 2
95 % 621 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 630 699 4
70 % 843 953 4
50 % 858 975 3
40 % 858 975 6
30 % 858 975 9
Entity #3 | Chains: C
PEPTIDE FROM IMPORTIN ALPHA-2 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
NATURAL KILLER CELL RECEPTOR KIR2DL2 protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24742
95 % 3 5 11478 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 4 6 10347
70 % 5 7 8164
50 % 12 14 3465
40 % 25 33 1264
30 % 29 37 1157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures