Sequence Similarity Clusters for the Entities in PDB 1EFX

Entity #1 | Chains: A
HLA-CW3 (HEAVY CHAIN) protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55401
95 % 5 5 11636 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 188 196 139
70 % 625 681 6
50 % 627 686 6
40 % 668 736 10
30 % 751 853 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 535 590 2
95 % 575 633 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 584 642 4
70 % 776 872 4
50 % 791 894 4
40 % 791 894 8
30 % 791 894 14
Entity #3 | Chains: C
PEPTIDE FROM IMPORTIN ALPHA-2 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
NATURAL KILLER CELL RECEPTOR KIR2DL2 protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 20930
95 % 3 5 10220 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 4 6 9012
70 % 5 7 7297
50 % 6 8 5656
40 % 18 24 1609
30 % 23 31 1218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.