Sequence Similarity Clusters for the Entities in PDB 1EFX

Entity #1 | Chains: A
HLA-CW3 (HEAVY CHAIN) protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58814
95 % 10 10 4568 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 196 204 136
70 % 667 732 6
50 % 669 737 7
40 % 711 788 10
30 % 806 919 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 568 632 2
95 % 609 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 618 685 4
70 % 828 936 4
50 % 843 958 3
40 % 843 958 7
30 % 843 958 12
Entity #3 | Chains: C
PEPTIDE FROM IMPORTIN ALPHA-2 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
NATURAL KILLER CELL RECEPTOR KIR2DL2 protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 22495
95 % 3 5 10942 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 4 6 9604
70 % 5 7 7813
50 % 6 8 6033
40 % 18 24 1726
30 % 23 31 1292

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures