Sequence Similarity Clusters for the Entities in PDB 1EFX

Entity #1 | Chains: A
HLA-CW3 (HEAVY CHAIN) protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54562
95 % 2 2 27873
90 % 181 189 144
70 % 613 668 7
50 % 615 673 7
40 % 656 723 10
30 % 739 840 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 524 579 2
95 % 564 622 3
90 % 573 631 4
70 % 765 861 5
50 % 780 883 5
40 % 780 883 9
30 % 780 883 14
Entity #3 | Chains: C
PEPTIDE FROM IMPORTIN ALPHA-2 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
NATURAL KILLER CELL RECEPTOR KIR2DL2 protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 20601
95 % 3 5 10057
90 % 4 6 8853
70 % 5 7 7180
50 % 6 8 5565
40 % 18 24 1600
30 % 23 31 1199

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.