Sequence Similarity Clusters for the Entities in PDB 1EFW

Entity #1 | Chains: C,D
ASPARTYL-TRNA rna, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
ASPARTYL-TRNA SYNTHETASE protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11145
95 % 3 3 11095 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.4
PDBFlex
90 % 3 3 10946
70 % 3 3 10383
50 % 10 11 2718
40 % 10 12 2234
30 % 10 12 2135

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.