Sequence Similarity Clusters for the Entities in PDB 1EFW

Entity #1 | Chains: C,D
ASPARTYL-TRNA rna, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
ASPARTYL-TRNA SYNTHETASE protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11405
95 % 3 3 11329 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.4
PDBFlex
90 % 3 3 11180
70 % 3 3 10602
50 % 10 11 2789
40 % 10 12 2311
30 % 10 12 2197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures