Sequence Similarity Clusters for the Entities in PDB 1EFU

Entity #1 | Chains: A,C
ELONGATION FACTOR TU protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 36 945
95 % 12 45 885 Flexibility: Medium
Max RMSD: 12.3, Avg RMSD: 3.5
PDBFlex
90 % 12 45 917
70 % 24 77 401
50 % 26 79 460
40 % 26 79 500
30 % 57 145 269
Entity #2 | Chains: B,D
ELONGATION FACTOR TS protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 5095
95 % 5 7 5412 Flexibility: Medium
Max RMSD: 18.0, Avg RMSD: 3.5
PDBFlex
90 % 5 7 5446
70 % 5 7 5328
50 % 5 7 5056
40 % 5 7 4746
30 % 6 9 3163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures