Sequence Similarity Clusters for the Entities in PDB 1EFR

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 29 306
95 % 12 41 284 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 12 41 297
70 % 16 59 169
50 % 18 71 171
40 % 18 71 186
30 % 18 71 202
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 40 210
95 % 12 42 285 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 12 42 298
70 % 18 72 142
50 % 18 72 172
40 % 18 72 187
30 % 18 72 203
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 895
95 % 12 39 1200 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 12 39 1229
70 % 12 41 1202
50 % 12 41 1258
40 % 16 65 638
30 % 16 65 626
Entity #4 | Chains: Q
EFRAPEPTIN C protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.