Sequence Similarity Clusters for the Entities in PDB 1EFR

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 33 287
95 % 12 41 306 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 12 41 318
70 % 16 62 177
50 % 18 77 174
40 % 18 77 188
30 % 18 77 207
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 40 240
95 % 12 42 307 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 12 42 319
70 % 18 78 146
50 % 18 79 173
40 % 18 79 187
30 % 18 79 205
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 1101
95 % 12 39 1320 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 12 39 1339
70 % 12 41 1294
50 % 12 41 1347
40 % 16 68 660
30 % 16 68 658
Entity #4 | Chains: Q
EFRAPEPTIN C protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures