Sequence Similarity Clusters for the Entities in PDB 1EFN

Entity #1 | Chains: A,C
FYN TYROSINE KINASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50313
95 % 8 15 2477 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 8 15 2538
70 % 32 49 760
50 % 36 66 562
40 % 134 287 126
30 % 523 1062 9
Entity #2 | Chains: B,D
HIV-1 NEF PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45419
95 % 1 5 6671 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 6665
70 % 5 12 2341
50 % 7 15 1922
40 % 7 15 1920
30 % 7 15 1850

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures