Sequence Similarity Clusters for the Entities in PDB 1EFN

Entity #1 | Chains: A,C
FYN TYROSINE KINASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47387
95 % 8 15 2286 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 8 15 2349
70 % 32 49 712
50 % 36 65 541
40 % 132 284 120
30 % 479 986 10
Entity #2 | Chains: B,D
HIV-1 NEF PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42661
95 % 1 5 6230 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 6217
70 % 5 11 2889
50 % 6 13 2482
40 % 6 13 2440
30 % 6 13 2318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.