Sequence Similarity Clusters for the Entities in PDB 1EFN

Entity #1 | Chains: A,C
FYN TYROSINE KINASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36361
95 % 8 15 2499 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 8 15 2574
70 % 32 49 762
50 % 61 95 369
40 % 151 318 110
30 % 189 401 70
Entity #2 | Chains: B,D
HIV-1 NEF PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41207
95 % 1 5 6721 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 6707
70 % 5 12 2376
50 % 7 15 1920
40 % 7 15 1923
30 % 7 15 1840

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures