Sequence Similarity Clusters for the Entities in PDB 1EFN

Entity #1 | Chains: A,C
FYN TYROSINE KINASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49394
95 % 8 15 2413 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 8 15 2478
70 % 32 49 750
50 % 36 66 555
40 % 133 286 123
30 % 509 1044 9
Entity #2 | Chains: B,D
HIV-1 NEF PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44555
95 % 1 5 6538 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 6523
70 % 5 11 3021
50 % 7 14 2354
40 % 7 14 2336
30 % 7 14 2225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures