Sequence Similarity Clusters for the Entities in PDB 1EFA

Entity #1 | Chains: D,E
DNA (5'-D(*GP*AP*AP*T*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
LAC REPRESSOR protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11725
95 % 4 11 1636 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.2
PDBFlex
90 % 4 11 1671
70 % 4 11 1688
50 % 4 11 1731
40 % 4 11 1724
30 % 36 52 581

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures