Sequence Similarity Clusters for the Entities in PDB 1EFA

Entity #1 | Chains: D,E
DNA (5'-D(*GP*AP*AP*T*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
LAC REPRESSOR protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2541
95 % 4 11 1498 Flexibility: Low
Max RMSD: 13.9, Avg RMSD: 2.5
PDBFlex
90 % 4 11 1527
70 % 4 11 1537
50 % 4 11 1568
40 % 4 11 1592
30 % 4 11 1569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.