Sequence Similarity Clusters for the Entities in PDB 1EF2

Entity #1 | Chains: A
UREASE ALPHA SUBUNIT protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 7483
95 % 28 31 1929 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 28 31 1968
70 % 28 31 1985
50 % 42 50 947
40 % 42 50 968
30 % 42 50 954
Entity #2 | Chains: B
UREASE BETA SUBUNIT protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 31 1610
95 % 28 31 1895 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 28 31 1934
70 % 28 31 1954
50 % 28 31 2019
40 % 28 31 1996
30 % 28 31 1904
Entity #3 | Chains: C
UREASE GAMMA SUBUNIT protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 31 1607
95 % 28 31 1897 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 28 31 1935
70 % 42 45 1275
50 % 43 47 1085
40 % 43 47 1098
30 % 43 47 1086

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures