Sequence Similarity Clusters for the Entities in PDB 1EF2

Entity #1 | Chains: A
UREASE ALPHA SUBUNIT protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 5703
95 % 28 31 1691 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 28 31 1724
70 % 28 31 1759
50 % 41 49 888
40 % 41 49 915
30 % 41 49 894
Entity #2 | Chains: B
UREASE BETA SUBUNIT protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 31 1279
95 % 28 31 1732 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 28 31 1770
70 % 28 31 1798
50 % 28 31 1820
40 % 28 31 1831
30 % 28 31 1771
Entity #3 | Chains: C
UREASE GAMMA SUBUNIT protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 31 1281
95 % 28 31 1734 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 28 31 1772
70 % 41 44 1216
50 % 42 46 1029
40 % 42 46 1041
30 % 42 46 1019

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.