Sequence Similarity Clusters for the Entities in PDB 1EF2

Entity #1 | Chains: A
UREASE ALPHA SUBUNIT protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 5895
95 % 28 31 1754
90 % 28 31 1788
70 % 28 31 1811
50 % 41 49 914
40 % 41 49 938
30 % 41 49 915
Entity #2 | Chains: B
UREASE BETA SUBUNIT protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 31 1324
95 % 28 31 1793 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 28 31 1832
70 % 28 31 1855
50 % 28 31 1875
40 % 28 31 1884
30 % 28 31 1822
Entity #3 | Chains: C
UREASE GAMMA SUBUNIT protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 31 1326
95 % 28 31 1795 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 28 31 1834
70 % 41 44 1240
50 % 42 46 1059
40 % 42 46 1065
30 % 42 46 1040

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.