Sequence Similarity Clusters for the Entities in PDB 1EEZ

Entity #1 | Chains: A,D
HLA-A2.1 MHC CLASS I (HEAVY CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 199 53
95 % 195 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 234 297 36
70 % 537 705 6
50 % 538 710 6
40 % 576 761 10
30 % 627 881 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN (LIGHT CHAIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 473 607 2
95 % 507 651 3
90 % 513 660 4
70 % 657 898 4
50 % 669 920 3
40 % 669 920 8
30 % 669 920 12
Entity #3 | Chains: C,F
GP2 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.