Sequence Similarity Clusters for the Entities in PDB 1EEZ

Entity #1 | Chains: A,D
HLA-A2.1 MHC CLASS I (HEAVY CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 204 52
95 % 197 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 236 302 35
70 % 544 717 6
50 % 545 722 6
40 % 583 773 10
30 % 637 897 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN (LIGHT CHAIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 479 618 2
95 % 513 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 519 671 4
70 % 666 914 4
50 % 678 936 3
40 % 678 936 7
30 % 678 936 12
Entity #3 | Chains: C,F
GP2 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.