Sequence Similarity Clusters for the Entities in PDB 1EEZ

Entity #1 | Chains: A,D
HLA-A2.1 MHC CLASS I (HEAVY CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 197 52
95 % 192 246 58 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 228 287 36
70 % 520 679 6
50 % 521 684 6
40 % 558 734 10
30 % 606 851 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN (LIGHT CHAIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 462 588 2
95 % 495 631 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 501 640 4
70 % 638 870 4
50 % 650 892 4
40 % 650 892 8
30 % 650 892 14
Entity #3 | Chains: C,F
GP2 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.