Sequence Similarity Clusters for the Entities in PDB 1EEZ

Entity #1 | Chains: A,D
HLA-A2.1 MHC CLASS I (HEAVY CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 197 52
95 % 192 246 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 231 290 36
70 % 525 684 6
50 % 526 689 6
40 % 563 739 10
30 % 611 856 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN (LIGHT CHAIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 467 593 2
95 % 500 636 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 506 645 4
70 % 643 875 4
50 % 655 897 4
40 % 655 897 9
30 % 655 897 14
Entity #3 | Chains: C,F
GP2 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.