Sequence Similarity Clusters for the Entities in PDB 1EEY

Entity #1 | Chains: A,D
HLA-A2.1 MHC CLASS I (HEAVY CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 141 204 53
95 % 186 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 217 309 36
70 % 505 736 6
50 % 514 750 6
40 % 541 792 10
30 % 590 923 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN (LIGHT CHAIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 447 634 2
95 % 476 678 3
90 % 481 687 4
70 % 616 940 4
50 % 628 962 3
40 % 628 962 7
30 % 628 962 12
Entity #3 | Chains: C,F
GP2 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures