Sequence Similarity Clusters for the Entities in PDB 1ED3

Entity #1 | Chains: A,D
CLASS I MAJOR HISTOCOMPATIBILITY ANTIGEN RT1-AA protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26092
95 % 2 2 21872 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 21255
70 % 534 684 6
50 % 535 689 6
40 % 572 739 10
30 % 620 856 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 7315
95 % 4 6 7862 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 6 7818
70 % 652 875 4
50 % 664 900 3
40 % 664 900 8
30 % 664 897 14
Entity #3 | Chains: C,F
PEPTIDE MTF-E (13N3E) protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.