Sequence Similarity Clusters for the Entities in PDB 1ED3

Entity #1 | Chains: A,D
CLASS I MAJOR HISTOCOMPATIBILITY ANTIGEN RT1-AA protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27214
95 % 2 2 23883 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 2 23116
70 % 566 740 6
50 % 575 754 7
40 % 607 806 9
30 % 665 930 12
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8350
95 % 4 6 8404 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 6 8328
70 % 691 944 4
50 % 703 966 3
40 % 703 966 6
30 % 703 966 9
Entity #3 | Chains: C,F
PEPTIDE MTF-E (13N3E) protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures