Sequence Similarity Clusters for the Entities in PDB 1ED3

Entity #1 | Chains: A,D
CLASS I MAJOR HISTOCOMPATIBILITY ANTIGEN RT1-AA protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26832
95 % 2 2 22504 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 2 21855
70 % 551 719 6
50 % 552 724 6
40 % 590 775 10
30 % 644 899 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 7507
95 % 4 6 8073 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 6 8021
70 % 673 916 4
50 % 685 938 3
40 % 685 938 7
30 % 685 938 12
Entity #3 | Chains: C,F
PEPTIDE MTF-E (13N3E) protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures