Sequence Similarity Clusters for the Entities in PDB 1ED3

Entity #1 | Chains: A,D
CLASS I MAJOR HISTOCOMPATIBILITY ANTIGEN RT1-AA protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26512
95 % 2 2 22248 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 21613
70 % 543 705 6
50 % 544 710 6
40 % 582 761 10
30 % 633 881 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 7400
95 % 4 6 7967 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 6 7923
70 % 663 898 4
50 % 675 920 3
40 % 675 920 8
30 % 675 920 12
Entity #3 | Chains: C,F
PEPTIDE MTF-E (13N3E) protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.