Sequence Similarity Clusters for the Entities in PDB 1EC6

Entity #1 | Chains: C,D
20-MER RNA HAIRPIN rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
RNA-BINDING PROTEIN NOVA-2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48006
95 % 1 1 35856 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 34239
70 % 1 1 30434
50 % 1 1 26009
40 % 1 1 22928
30 % 1 1 19418

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures