Sequence Similarity Clusters for the Entities in PDB 1EC6

Entity #1 | Chains: C,D
20-MER RNA HAIRPIN rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
RNA-BINDING PROTEIN NOVA-2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37681
95 % 1 1 29988 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 28785
70 % 1 1 25882
50 % 1 1 21450
40 % 1 1 18915
30 % 1 1 15844

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures