Sequence Similarity Clusters for the Entities in PDB 1EB1

Entity #1 | Chains: A
PEPTIDE INHIBITOR protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: H
THROMBIN HEAVY CHAIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 290 55
95 % 125 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 125 381 39
70 % 125 405 45
50 % 125 405 81
40 % 775 1695 4
30 % 819 1845 6
Entity #3 | Chains: L
THROMBIN LIGHT CHAIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 335 45
95 % 121 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 121 336 66
70 % 121 338 77
50 % 121 338 102
40 % 121 338 126
30 % 121 338 137
Entity #4 | Chains: B
3-CYCLOHEXYL-D-ALANYL-L-PROLYL-N~2~-METHYL-L-ARGININE protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.