Sequence Similarity Clusters for the Entities in PDB 1EB1

Entity #1 | Chains: A
PEPTIDE INHIBITOR protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: H
THROMBIN HEAVY CHAIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 118 332 53
95 % 127 378 52 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 127 385 56
70 % 127 409 47
50 % 127 409 85
40 % 843 1884 4
30 % 847 1898 7
Entity #3 | Chains: L
THROMBIN LIGHT CHAIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 334 52
95 % 123 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 123 342 67
70 % 123 342 80
50 % 123 342 111
40 % 123 342 135
30 % 123 342 145
Entity #4 | Chains: B
3-CYCLOHEXYL-D-ALANYL-L-PROLYL-N~2~-METHYL-L-ARGININE protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures