Sequence Similarity Clusters for the Entities in PDB 1EB1

Entity #1 | Chains: A
PEPTIDE INHIBITOR protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: H
THROMBIN HEAVY CHAIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 290 75
95 % 127 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 127 384 48
70 % 127 408 46
50 % 127 408 84
40 % 837 1863 4
30 % 842 1885 6
Entity #3 | Chains: L
THROMBIN LIGHT CHAIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 123 338 45
95 % 123 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 123 339 67
70 % 123 341 78
50 % 123 341 109
40 % 123 341 132
30 % 123 341 140
Entity #4 | Chains: B
3-CYCLOHEXYL-D-ALANYL-L-PROLYL-N~2~-METHYL-L-ARGININE protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures