Sequence Similarity Clusters for the Entities in PDB 1EAP

Entity #1 | Chains: A
IGG2B-KAPPA 17E8 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63169
95 % 6 10 5605 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 7 11 5272
70 % 1040 2621 1
50 % 2138 5323 1
40 % 2461 6003 1
30 % 2993 7460 1
Entity #2 | Chains: B
IGG2B-KAPPA 17E8 FAB (HEAVY CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64154
95 % 1 1 52079
90 % 1 1 49343
70 % 1032 2580 2
50 % 2139 5323 1
40 % 2462 6003 1
30 % 2994 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures