Sequence Similarity Clusters for the Entities in PDB 1EAP

Entity #1 | Chains: A
IGG2B-KAPPA 17E8 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65299
95 % 6 10 5839 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 7 11 5483
70 % 1080 2750 1
50 % 2223 5586 1
40 % 2562 6331 1
30 % 3116 7871 1
Entity #2 | Chains: B
IGG2B-KAPPA 17E8 FAB (HEAVY CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66293
95 % 1 1 53767
90 % 1 1 50926
70 % 1073 2708 2
50 % 2224 5586 1
40 % 2563 6331 1
30 % 3117 7871 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures