Sequence Similarity Clusters for the Entities in PDB 1EAP

Entity #1 | Chains: A
IGG2B-KAPPA 17E8 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62311
95 % 4 8 7592 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 5 9 6800
70 % 1019 2576 1
50 % 2092 5225 1
40 % 2408 5883 1
30 % 2932 7321 1
Entity #2 | Chains: B
IGG2B-KAPPA 17E8 FAB (HEAVY CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63284
95 % 1 1 51433
90 % 1 1 48768
70 % 1010 2532 2
50 % 2093 5225 1
40 % 2409 5883 1
30 % 2933 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures