Sequence Similarity Clusters for the Entities in PDB 1EAP

Entity #1 | Chains: A
IGG2B-KAPPA 17E8 FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62819
95 % 4 8 7325 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 5 9 6614
70 % 985 2474 1
50 % 2017 5011 1
40 % 2017 5011 1
30 % 2310 5941 1
Entity #2 | Chains: B
IGG2B-KAPPA 17E8 FAB (HEAVY CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62400
95 % 1 1 43714
90 % 1 1 41561
70 % 973 2424 2
50 % 2018 5011 1
40 % 2018 5011 1
30 % 2311 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures