Sequence Similarity Clusters for the Entities in PDB 1EAK

Entity #1 | Chains: A,B,C,D
72 KDA TYPE IV COLLAGENASE protein, length: 421 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18495
95 % 1 1 16732 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 1 16410
70 % 1 1 15317
50 % 2 2 11783
40 % 2 2 10674
30 % 2 2 9308
Entity #2 | Chains: P,R
INHIBITOR PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures