Sequence Similarity Clusters for the Entities in PDB 1E9Z

Entity #1 | Chains: A
UREASE SUBUNIT ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33903
95 % 1 2 29264 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 28105
70 % 1 2 25271
50 % 3 4 4922
40 % 3 4 4640
30 % 3 4 4163
Entity #2 | Chains: B
UREASE SUBUNIT BETA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48947
95 % 1 2 37704 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 2 35960
70 % 3 4 5299
50 % 48 50 998
40 % 48 50 1019
30 % 48 50 1003

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QGA 1 A, D, G, J, M, P Fusion of urease beta and gamma subunits 217
2 3QGK 1 A, D, G, J, M, P Fusion of urease beta and gamma subunits 217
3 1E9Z 1 A UREASE SUBUNIT ALPHA 210 3.5.1.5 | Details
4 1E9Y 1 A UREASE SUBUNIT ALPHA 210 3.5.1.5 | Details