Sequence Similarity Clusters for the Entities in PDB 1E9Y

Entity #1 | Chains: A
UREASE SUBUNIT ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34203
95 % 2 2 29501 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 28323
70 % 2 2 25461
50 % 4 4 4962
40 % 4 4 4676
30 % 4 4 4196
Entity #2 | Chains: B
UREASE SUBUNIT BETA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51967
95 % 2 2 38020 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 36245
70 % 4 4 5345
50 % 50 51 999
40 % 50 51 1020
30 % 50 51 1004

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QGA 1 A, D, G, J, M, P Fusion of urease beta and gamma subunits 217 3.5.1.5 | Details
2 3QGK 1 A, D, G, J, M, P Fusion of urease beta and gamma subunits 217 3.5.1.5 | Details
3 1E9Z 1 A UREASE SUBUNIT ALPHA 210 3.5.1.5 | Details
4 1E9Y 1 A UREASE SUBUNIT ALPHA 210 3.5.1.5 | Details