Sequence Similarity Clusters for the Entities in PDB 1E8S

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10598
95 % 5 6 7870 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7829
70 % 5 6 7548
50 % 5 6 6952
40 % 5 6 6468
30 % 5 6 5767
Entity #2 | Chains: B
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10539
95 % 4 5 10545 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 5 10408
70 % 4 5 9859
50 % 4 5 8932
40 % 4 5 8180
30 % 6 10 3934
Entity #3 | Chains: C
7SL RNA, 88-MER rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.