Sequence Similarity Clusters for the Entities in PDB 1E8S

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7979
95 % 5 6 8052 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 5 6 7977
70 % 5 6 7774
50 % 5 6 7139
40 % 5 6 6595
30 % 5 6 5768
Entity #2 | Chains: B
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10940
95 % 4 5 10592 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 6 8562
70 % 4 6 8251
50 % 4 6 7569
40 % 4 6 6956
30 % 6 11 3752
Entity #3 | Chains: C
7SL RNA, 88-MER rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures