Sequence Similarity Clusters for the Entities in PDB 1E8S

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10903
95 % 5 6 8096 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 5 6 8045
70 % 5 6 7782
50 % 5 6 7167
40 % 5 6 6662
30 % 5 6 5940
Entity #2 | Chains: B
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10844
95 % 4 5 10846 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 5 10698
70 % 4 5 10153
50 % 4 5 9192
40 % 4 5 8408
30 % 6 10 4054
Entity #3 | Chains: C
7SL RNA, 88-MER rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures