Sequence Similarity Clusters for the Entities in PDB 1E8S

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10756
95 % 5 6 7989 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 5 6 7946
70 % 5 6 7698
50 % 5 6 7081
40 % 5 6 6582
30 % 5 6 5871
Entity #2 | Chains: B
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10696
95 % 4 5 10716 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 4 5 10579
70 % 4 5 10051
50 % 4 5 9091
40 % 4 5 8318
30 % 6 10 4004
Entity #3 | Chains: C
7SL RNA, 88-MER rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.