Sequence Similarity Clusters for the Entities in PDB 1E8O

Entity #1 | Chains: A,C
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11104
95 % 4 6 8229 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 6 8176
70 % 4 6 7902
50 % 4 6 7279
40 % 4 6 6770
30 % 4 6 6038
Entity #2 | Chains: B,D
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11046
95 % 3 5 11029 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 5 10882
70 % 3 5 10324
50 % 3 5 9344
40 % 3 5 8547
30 % 5 10 4115
Entity #3 | Chains: E
7SL RNA rna, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures