Sequence Similarity Clusters for the Entities in PDB 1E8O

Entity #1 | Chains: A,C
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8036
95 % 4 6 8102 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 6 8032
70 % 4 6 7830
50 % 4 6 7181
40 % 4 6 6634
30 % 4 6 5802
Entity #2 | Chains: B,D
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11006
95 % 3 5 10652 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 6 8611
70 % 3 6 8301
50 % 3 6 7610
40 % 3 6 6991
30 % 5 11 3767
Entity #3 | Chains: E
7SL RNA rna, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures