Sequence Similarity Clusters for the Entities in PDB 1E8O

Entity #1 | Chains: A,C
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 10893
95 % 4 6 8089 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 6 8040
70 % 4 6 7776
50 % 4 6 7159
40 % 4 6 6656
30 % 4 6 5936
Entity #2 | Chains: B,D
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 10834
95 % 3 5 10835 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 5 10689
70 % 3 5 10141
50 % 3 5 9179
40 % 3 5 8397
30 % 5 10 4050
Entity #3 | Chains: E
7SL RNA rna, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.