Sequence Similarity Clusters for the Entities in PDB 1E8O

Entity #1 | Chains: A,C
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11276
95 % 4 6 8353 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 6 8297
70 % 4 6 8013
50 % 4 6 7383
40 % 4 6 6856
30 % 4 6 6116
Entity #2 | Chains: B,D
SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11217
95 % 3 5 11195 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 6 10047
70 % 3 6 9544
50 % 3 6 8633
40 % 3 6 7910
30 % 5 11 3890
Entity #3 | Chains: E
7SL RNA rna, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures