Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 33 287
95 % 8 41 307 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 319
70 % 9 62 177
50 % 10 77 175
40 % 10 77 189
30 % 10 77 210
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 242
95 % 8 42 309 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 8 42 321
70 % 10 78 147
50 % 10 79 174
40 % 10 79 188
30 % 10 79 207
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 1116
95 % 8 39 1330 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 8 39 1350
70 % 8 41 1307
50 % 8 41 1361
40 % 8 68 662
30 % 8 68 663
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3986
95 % 5 15 4354 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4402
70 % 5 15 4316
50 % 5 15 4157
40 % 5 15 3935
30 % 5 32 1301
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2907
95 % 5 19 3229 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3287
70 % 5 19 3237
50 % 5 19 3179
40 % 5 19 3096
30 % 5 19 2856

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 5 I ATP SYNTHASE EPSILON CHAIN 9913 3.6.3.14 | Details
2 2CK3 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 5 I BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 5 I ATP SYNTHASE EPSILON CHAIN 9913 3.6.1.14 | Details
5 1E79 5 I ATP SYNTHASE EPSILON CHAIN 9913 3.6.3.14 | Details
6 4ASU 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913
7 4YXW 5 I ATP synthase subunit epsilon, mitochondrial 9913
8 2WSS 5 I, R ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913
9 2XND 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL RESIDUES 2-48 9913 3.6.3.14 | Details
10 2W6J 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
11 2W6I 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
12 2W6H 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
13 5FIJ 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
14 5FIK 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
15 5FIL 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
16 5ARA 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
17 5ARE 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
18 5ARH 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
19 5ARI 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913