Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 33 283
95 % 8 41 303 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 315
70 % 9 62 173
50 % 10 77 172
40 % 10 77 186
30 % 10 77 204
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 236
95 % 8 42 304 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 8 42 316
70 % 10 78 144
50 % 10 79 171
40 % 10 79 185
30 % 10 79 202
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 1088
95 % 8 39 1307 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 8 39 1327
70 % 8 41 1279
50 % 8 41 1335
40 % 8 68 642
30 % 8 68 641
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3951
95 % 5 15 4307 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4348
70 % 5 15 4257
50 % 5 15 4109
40 % 5 15 3894
30 % 5 32 1279
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2836
95 % 5 19 3168 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3222
70 % 5 19 3157
50 % 5 19 3111
40 % 5 19 3039
30 % 5 19 2800

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 5 I ATP SYNTHASE EPSILON CHAIN 9913 3.6.3.14 | Details
2 2CK3 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 5 I BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 5 I ATP SYNTHASE EPSILON CHAIN 9913 3.6.1.14 | Details
5 1E79 5 I ATP SYNTHASE EPSILON CHAIN 9913 3.6.3.14 | Details
6 4ASU 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913
7 4YXW 5 I ATP synthase subunit epsilon, mitochondrial 9913
8 2WSS 5 I, R ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913
9 2XND 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL RESIDUES 2-48 9913 3.6.3.14 | Details
10 2W6J 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
11 2W6I 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
12 2W6H 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 9913 3.6.3.14 | Details
13 5FIJ 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
14 5FIK 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
15 5FIL 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
16 5ARA 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
17 5ARE 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
18 5ARH 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913
19 5ARI 5 I ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UNP RESIDUES 2-51 9913