Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 351
95 % 8 41 292 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 305
70 % 9 60 169
50 % 10 72 171
40 % 10 72 185
30 % 10 72 198
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 214
95 % 8 42 293 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 8 42 306
70 % 10 73 142
50 % 10 73 172
40 % 10 73 186
30 % 10 73 199
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 916
95 % 8 39 1235 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 8 39 1264
70 % 8 41 1222
50 % 8 41 1283
40 % 8 66 635
30 % 8 66 618
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3526
95 % 5 15 4306 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4335
70 % 5 15 4259
50 % 5 15 4092
40 % 5 15 3914
30 % 5 30 1282
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2683
95 % 5 19 3321 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3365
70 % 5 19 3323
50 % 5 19 3230
40 % 5 19 3146
30 % 5 19 2945

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 4 H ATP SYNTHASE DELTA CHAIN RESIDUES 23-168 9913 3.6.3.14 | Details
2 2CK3 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 4 H BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 4 H ATP SYNTHASE DELTA CHAIN RESIDUES 23-168 9913 3.6.1.14 | Details
5 1E79 4 H ATP SYNTHASE DELTA CHAIN 9913 3.6.3.14 | Details
6 4ASU 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 9913
7 4YXW 4 H ATP synthase subunit delta, mitochondrial 9913
8 2WSS 4 H, Q ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 9913
9 5FIJ 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
10 5FIK 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
11 5FIL 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
12 5ARA 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
13 5ARE 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
14 5ARH 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
15 5ARI 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913