Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 33 287
95 % 8 41 306 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 318
70 % 9 62 177
50 % 10 77 174
40 % 10 77 188
30 % 10 77 207
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 240
95 % 8 42 307 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 8 42 319
70 % 10 78 146
50 % 10 79 173
40 % 10 79 187
30 % 10 79 205
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 1101
95 % 8 39 1320 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 8 39 1339
70 % 8 41 1294
50 % 8 41 1347
40 % 8 68 660
30 % 8 68 658
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3933
95 % 5 15 4297 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4345
70 % 5 15 4260
50 % 5 15 4110
40 % 5 15 3893
30 % 5 32 1289
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2876
95 % 5 19 3203 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3260
70 % 5 19 3198
50 % 5 19 3147
40 % 5 19 3069
30 % 5 19 2837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 4 H ATP SYNTHASE DELTA CHAIN RESIDUES 23-168 9913 3.6.3.14 | Details
2 2CK3 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 4 H BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 4 H ATP SYNTHASE DELTA CHAIN RESIDUES 23-168 9913 3.6.1.14 | Details
5 1E79 4 H ATP SYNTHASE DELTA CHAIN 9913 3.6.3.14 | Details
6 4ASU 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 9913
7 4YXW 4 H ATP synthase subunit delta, mitochondrial 9913
8 2WSS 4 H, Q ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 9913
9 5FIJ 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
10 5FIK 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
11 5FIL 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
12 5ARA 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
13 5ARE 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
14 5ARH 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913
15 5ARI 4 H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UNP RESIDUES 23-168 9913