Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 344
95 % 8 41 287 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 301
70 % 9 59 170
50 % 10 71 172
40 % 10 71 186
30 % 10 71 201
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 211
95 % 8 42 288 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 8 42 302
70 % 10 72 143
50 % 10 72 173
40 % 10 72 187
30 % 10 72 202
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 905
95 % 8 39 1210 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 8 39 1238
70 % 8 41 1208
50 % 8 41 1265
40 % 8 65 638
30 % 8 65 626
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3468
95 % 5 15 4239 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4270
70 % 5 15 4194
50 % 5 15 4032
40 % 5 15 3859
30 % 5 29 1317
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2633
95 % 5 19 3259 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3305
70 % 5 19 3266
50 % 5 19 3176
40 % 5 19 3094
30 % 5 19 2900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 3 G ATP SYNTHASE GAMMA CHAIN RESIDUES 26-298 9913 3.6.3.14 | Details
2 2CK3 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 3 G BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 3 G ATP SYNTHASE GAMMA CHAIN RESIDUES 26-297 9913 3.6.3.14 | Details
5 2JIZ 3 G, N ATP SYNTHASE GAMMA CHAIN RESIDUES 26-297 9913 3.6.3.14 | Details
6 1W0J 3 G ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
7 2JJ2 3 G, N ATP SYNTHASE GAMMA CHAIN RESIDUES 26-297 9913 3.6.3.14 | Details
8 1E79 3 G ATP SYNTHASE GAMMA CHAIN 9913 3.6.3.14 | Details
9 1E1R 3 G BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
10 2JJ1 3 G, N ATP SYNTHASE GAMMA CHAIN RESIDUES 26-297 9913 3.6.3.14 | Details
11 1E1Q 3 G BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
12 1EFR 3 G BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT GAMMA 9913 3.6.3.14 | Details
13 1MAB 3 G PROTEIN (F1-ATPASE GAMMA CHAIN) GAMMA CHAIN 10116 3.6.3.14 | Details
14 4ASU 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913
15 1NBM 4 G F1-ATPASE 9913 3.6.3.14 | Details
16 1W0K 3 G ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
17 1OHH 3 G ATP synthase subunit gamma, mitochondrial 9913
18 1H8H 3 G BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
19 4YXW 3 G ATP synthase subunit gamma, mitochondrial 9913
20 2WSS 3 G, P ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL HEART ISOFORM, RESIDUES 26-297 9913
21 4TSF 3 G ATP synthase subunit gamma, mitochondrial 9913
22 4TT3 3 G ATP synthase subunit gamma, mitochondrial 9913
23 4Z1M 3 G ATP synthase subunit gamma, mitochondrial 9913
24 1COW 3 G BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
25 2F43 3 G ATP synthase gamma chain, mitochondrial 10116 3.6.3.14 | Details
26 2XND 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL RESIDUES 26-297 9913 3.6.3.14 | Details
27 2W6J 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
28 2W6I 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
29 2W6H 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
30 2W6E 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
31 2W6G 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
32 2W6F 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL 9913 3.6.3.14 | Details
33 5FIJ 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
34 5FIK 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
35 5FIL 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
36 5ARA 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
37 5ARE 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
38 5ARH 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
39 5ARI 3 G ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL UNP RESIDUES 26-298 9913
40 1QO1 3 G ATP SYNTHASE GAMMA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE GAMMA CHAIN SEQUENCE (SWISSPROT P05631) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 3.6.3.14 | Details
41 1BMF 3 G BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details