Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 352
95 % 8 41 295 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 308
70 % 9 60 169
50 % 10 72 172
40 % 10 72 186
30 % 10 72 199
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 215
95 % 8 42 296 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 8 42 309
70 % 10 73 142
50 % 10 74 167
40 % 10 74 182
30 % 10 74 195
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 918
95 % 8 39 1239 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 8 39 1268
70 % 8 41 1224
50 % 8 41 1287
40 % 8 66 636
30 % 8 66 618
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3535
95 % 5 15 4316 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4345
70 % 5 15 4269
50 % 5 15 4100
40 % 5 15 3921
30 % 5 30 1283
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2687
95 % 5 19 3328 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3372
70 % 5 19 3332
50 % 5 19 3239
40 % 5 19 3153
30 % 5 19 2951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 2 D, E, F ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
2 2CK3 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 2 D, E, F ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
5 2JIZ 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
6 1W0J 2 D, E, F ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
7 4Q4L 1 A ATP synthase subunit beta 1 57975 3.6.3.14 | Details
8 2JJ2 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
9 5CDF 2 E ATP synthase subunit beta 266 3.6.3.14 | Details
10 1E79 2 D, E, F ATP SYNTHASE BETA CHAIN 9913 3.6.3.14 | Details
11 1E1R 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
12 3ZIA 2 D, E, F, N, O, P ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 4932 3.6.3.14 | Details
13 5IK2 2 D, E, F, L, M, N ATP synthase subunit beta 296745 3.6.3.14 | Details
14 2JJ1 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
15 3OEE 2 D, E, F, M, N, O, V, W, X ATP synthase subunit beta UNP RESIDUES 34-511 4932 3.6.3.14 | Details
16 1E1Q 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
17 2HLD 2 D, E, F, M, N, O, V, W, X ATP synthase beta chain, mitochondrial 4932 3.6.3.14 | Details
18 1EFR 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA 9913 3.6.3.14 | Details
19 1MAB 2 B PROTEIN (F1-ATPASE BETA CHAIN) BETA CHAIN 10116 3.6.3.14 | Details
20 4ASU 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
21 5HKK 2 D, E, F, L, M, N ATP synthase subunit beta 296745 3.6.3.14 | Details
22 1NBM 2 D, F F1-ATPASE 9913 3.6.3.14 | Details
23 1NBM 3 E F1-ATPASE 9913 3.6.3.14 | Details
24 1W0K 2 D, E, F ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
25 1OHH 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
26 3OEH 2 D, E, F, M, N, O, V, W, X ATP synthase subunit beta UNP RESIDUES 34-511 4932 3.6.3.14 | Details
27 2XOK 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 4932 3.6.3.14 | Details
28 3OE7 2 D, E, F, M, N, O, V, W, X ATP synthase subunit beta UNP RESIDUES 34-511 4932 3.6.3.14 | Details
29 1H8H 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
30 3OFN 2 D, E, F, M, N, O, V, W, X ATP synthase subunit beta UNP RESIDUES 34-511 4932 3.6.3.14 | Details
31 4YXW 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
32 2WSS 2 D, E, F, M, N, O ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 47-528 9913 3.6.3.14 | Details
33 1SKY 2 E F1-ATPASE 2334 3.6.3.14 | Details
34 4TSF 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
35 2QE7 2 D, E, F ATP synthase subunit beta 90973 3.6.3.14 | Details
36 4TT3 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
37 3OAA 2 D, E, F, L, M, N, T, U, V, b, c, d ATP synthase subunit beta 562 3.6.3.14 | Details
38 4Z1M 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
39 1COW 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
40 6F5D 2 D, E, F ATP synthase subunit beta 5691 3.6.3.14 | Details
41 3FKS 2 D, E, F, M, N, O, V, W, X ATP synthase subunit beta, mitochondrial UNP residues 34-511 4932 3.6.3.14 | Details
42 2F43 2 B ATP synthase beta chain, mitochondrial 10116 3.6.3.14 | Details
43 2XND 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 59-525 9913 3.6.3.14 | Details
44 5FL7 2 D, E, F ATP SYNTHASE SUBUNIT BETA 4952 3.6.3.14 | Details
45 4XD7 2 D, E, F ATP synthase subunit beta 2334 3.6.3.14 | Details
46 2WPD 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 4932 3.6.3.14 | Details
47 1KMH 2 B ATPase beta subunit 3562 3.6.3.14 | Details
48 1FX0 2 B ATP SYNTHASE BETA CHAIN 3562 3.6.3.14 | Details
49 2W6J 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
50 5DN6 5 D, E, F ATP synthase subunit beta 266 3.6.3.14 | Details
51 2W6I 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
52 2W6H 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
53 2W6E 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
54 2W6G 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
55 3ZRY 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 4932 3.6.3.14 | Details
56 2W6F 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
57 6B8H 12 D, E, F, Y, Z, c ATP synthase subunit beta, mitochondrial 4932 3.6.3.14 | Details
58 5T4O 2 D, E, F ATP synthase subunit beta 562 3.6.3.14 | Details
59 5T4P 2 D, E, F ATP synthase subunit beta 562 3.6.3.14 | Details
60 5T4Q 2 D, E, F ATP synthase subunit beta 562 3.6.3.14 | Details
61 5LQX 6 D, E, F ATP synthase beta subunit 870730 3.6.3.14 | Details
62 5LQY 6 D, E, F ATP synthase beta subunit 870730 3.6.3.14 | Details
63 5LQZ 6 D, E, F ATP synthase beta subunit 870730 3.6.3.14 | Details
64 5FIJ 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
65 5FIK 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
66 5FIL 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
67 5ARA 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
68 5ARE 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
69 5ARH 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
70 5ARI 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
71 4B2Q 3 D, d ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 39-508 4932 3.6.3.14 | Details
72 4B2Q 4 E, F, e, f ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 39-511 4932 3.6.3.14 | Details
73 1QO1 2 D, E, F ATP SYNTHASE BETA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE BETA CHAIN SEQUENCE (SWISSPROT P00829) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 3.6.3.14 | Details
74 1BMF 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details