Sequence Similarity Clusters for the Entities in PDB 1E79

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 350
95 % 8 41 291 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 8 41 304
70 % 9 60 169
50 % 10 72 168
40 % 10 72 183
30 % 10 72 196
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 213
95 % 8 42 292 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 8 42 305
70 % 10 73 141
50 % 10 73 169
40 % 10 73 184
30 % 10 73 197
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 910
95 % 8 39 1221 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 8 39 1247
70 % 8 41 1214
50 % 8 41 1275
40 % 8 66 632
30 % 8 66 616
Entity #4 | Chains: H
ATP SYNTHASE DELTA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3501
95 % 5 15 4272 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 15 4300
70 % 5 15 4224
50 % 5 15 4064
40 % 5 15 3886
30 % 5 30 1273
Entity #5 | Chains: I
ATP SYNTHASE EPSILON CHAIN protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2657
95 % 5 19 3287 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 19 3332
70 % 5 19 3292
50 % 5 19 3202
40 % 5 19 3119
30 % 5 19 2924

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
2 2CK3 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2R9V 1 A ATP synthase subunit alpha 2336 3.6.3.14 | Details
5 2V7Q 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.1.14 | Details
6 2JIZ 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
7 1W0J 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
8 2JJ2 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
9 5CDF 1 A ATP synthase subunit alpha 266 3.6.3.14 | Details
10 1E79 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM 9913 3.6.3.14 | Details
11 1E1R 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
12 3ZIA 1 A, B, C, K, L, M ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
13 5IK2 1 A, B, C, I, J, K ATP synthase subunit alpha 296745 3.6.3.14 | Details
14 2JJ1 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
15 3OEE 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
16 1E1Q 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
17 2HLD 1 A, B, C, J, K, L, S, T, U ATP synthase alpha chain, mitochondrial 4932 3.6.3.14 | Details
18 1EFR 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA 9913 3.6.3.14 | Details
19 1MAB 1 A PROTEIN (F1-ATPASE ALPHA CHAIN) ALPHA CHAIN 10116 3.6.3.14 | Details
20 4ASU 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913
21 5HKK 1 A, B, C, I, J, K ATP synthase subunit alpha 296745 3.6.3.14 | Details
22 1NBM 1 A, B, C F1-ATPASE 9913 3.6.3.14 | Details
23 1W0K 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
24 1OHH 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
25 3OEH 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
26 2XOK 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
27 3OE7 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
28 1H8H 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
29 3OFN 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
30 4YXW 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
31 2WSS 1 A, B, C, J, K, L ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913
32 1SKY 1 B F1-ATPASE 2334 3.6.3.14 | Details
33 4TSF 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
34 2QE7 1 A, B, C ATP synthase subunit alpha 90973 3.6.3.14 | Details
35 4TT3 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
36 3OAA 1 A, B, C, I, J, K, Q, R, S, Y, Z, a ATP synthase subunit alpha 562 3.6.3.14 | Details
37 4Z1M 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
38 1COW 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
39 3FKS 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha, mitochondrial UNP residues 36-545 4932 3.6.3.14 | Details
40 2F43 1 A ATP synthase alpha chain, mitochondrial 10116 3.6.3.14 | Details
41 2XND 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 62-553 9913 3.6.3.14 | Details
42 5FL7 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA 4952
43 4XD7 1 A, B, C ATP synthase subunit alpha 2334 3.6.3.14 | Details
44 2WPD 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
45 1KMH 1 A ATPase alpha subunit 3562 3.6.3.14 | Details
46 1FX0 1 A ATP SYNTHASE ALPHA CHAIN 3562 3.6.3.14 | Details
47 2W6J 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
48 5DN6 4 A, B, C ATP synthase subunit alpha 266 3.6.3.14 | Details
49 2W6I 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
50 2W6H 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
51 2W6E 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
52 2W6G 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
53 3ZRY 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
54 2W6F 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
55 6B8H 11 B, C, K, W, X, n ATP synthase subunit alpha, mitochondrial 4932
56 5T4O 1 A, B, C ATP synthase subunit alpha 562 3.6.3.14 | Details
57 5T4P 1 A, B, C ATP synthase subunit alpha 562 3.6.3.14 | Details
58 5T4Q 1 A, B, C ATP synthase subunit alpha 562 3.6.3.14 | Details
59 5LQX 5 A, B, C ATP synthase alpha subunit 870730
60 5LQY 5 A, B, C ATP synthase alpha subunit 870730
61 5LQZ 5 A, B, C ATP synthase alpha subunit 870730
62 5FIJ 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
63 5FIK 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
64 5FIL 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
65 5ARA 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
66 5ARE 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
67 5ARH 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
68 5ARI 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
69 4B2Q 1 A, C, a, c ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 61-545 4932
70 4B2Q 2 B, b ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 60-545 4932
71 1QO1 1 A, B, C ATP SYNTHASE ALPHA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE ALPHA CHAIN HEART ISOFORM SEQUENCE (SWISSPROT P19483) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 3.6.3.14 | Details
72 1BMF 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details