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An Information Portal to 105906 Biological Macromolecular Structures

Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)
Sequence Clustering and Redundancy Reduction Results
1E79
Sequence Clusters for the Sequence Entities in PDB 1E79
Entity #1: Chains: A,B,C - ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 20 348
95% 8 32 270
90% 8 32 284
70% 8 44 118
50% 9 50 140
40% 9 50 170
30% 9 50 192
Entity #2: Chains: D,E,F - ATP SYNTHASE BETA CHAIN protein, length: 482 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 31 196
95% 8 33 271
90% 8 33 285
70% 9 51 103
50% 9 51 141
40% 9 51 171
30% 9 51 193
Entity #3: Chains: G - ATP SYNTHASE GAMMA CHAIN protein, length: 272 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 30 854
95% 8 30 1200
90% 8 30 1216
70% 8 32 1178
50% 8 32 1242
40% 8 43 696
30% 8 45 634
Entity #4: Chains: H - ATP SYNTHASE DELTA CHAIN protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 7039
95% 5 7 7361
90% 5 7 7299
70% 5 7 7015
50% 5 7 6423
40% 5 7 5925
30% 5 18 1406
Entity #5: Chains: I - ATP SYNTHASE EPSILON CHAIN protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 11 4071
95% 5 11 4631
90% 5 11 4644
70% 5 11 4588
50% 5 11 4384
40% 5 11 4128
30% 5 11 3746
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.