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An Information Portal to 105212 Biological Macromolecular Structures

Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)
Sequence Clustering and Redundancy Reduction Results
1E79
Sequence Clusters for the Sequence Entities in PDB 1E79
Entity #1: Chains: A,B,C - ATP SYNTHASE ALPHA CHAIN HEART ISOFORM protein, length: 510 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 20 345
95% 8 32 269
90% 8 32 281
70% 8 44 116
50% 9 50 135
40% 9 50 162
30% 9 50 188
Entity #2: Chains: D,E,F - ATP SYNTHASE BETA CHAIN protein, length: 482 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 31 194
95% 8 33 270
90% 8 33 282
70% 9 51 100
50% 9 51 136
40% 9 51 163
30% 9 51 189
Entity #3: Chains: G - ATP SYNTHASE GAMMA CHAIN protein, length: 272 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 30 843
95% 8 30 1192
90% 8 30 1205
70% 8 32 1166
50% 8 32 1229
40% 8 43 696
30% 8 45 625
Entity #4: Chains: H - ATP SYNTHASE DELTA CHAIN protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 6934
95% 5 7 7263
90% 5 7 7202
70% 5 7 6924
50% 5 7 6349
40% 5 7 5858
30% 5 18 1391
Entity #5: Chains: I - ATP SYNTHASE EPSILON CHAIN protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 11 3999
95% 5 11 4554
90% 5 11 4571
70% 5 11 4516
50% 5 11 4318
40% 5 11 4071
30% 5 11 3701
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.