Sequence Similarity Clusters for the Entities in PDB 1E6Y

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43389
95 % 1 1 36360 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 34723
70 % 1 1 29807
50 % 12 23 1212
40 % 12 23 1207
30 % 12 23 1209
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43387
95 % 1 1 36358 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 34721
70 % 1 1 30875
50 % 12 23 1201
40 % 12 23 1217
30 % 12 23 1212
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43388
95 % 1 1 36359 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34722
70 % 1 1 30876
50 % 12 22 1295
40 % 12 23 1222
30 % 12 23 1218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1E6Y 3 C, F METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA 2208 2.8.4.1 | Details