Sequence Similarity Clusters for the Entities in PDB 1E6Y

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31586
95 % 1 1 25877 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 25005
70 % 1 1 22720
50 % 12 23 1132
40 % 12 23 1141
30 % 12 23 1133
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33076
95 % 1 1 26711 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 25803
70 % 1 1 23399
50 % 12 23 1134
40 % 12 23 1145
30 % 12 23 1139
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38938
95 % 1 1 30054 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 28997
70 % 1 1 26123
50 % 12 22 1214
40 % 12 22 1227
30 % 12 22 1208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1E6Y 2 B, E METHYL-COENZYME M REDUCTASE I BETA SUBUNIT 2208 2.8.4.1 | Details