Sequence Similarity Clusters for the Entities in PDB 1E6Y

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44139
95 % 1 1 36980 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 35293
70 % 1 1 30259
50 % 12 23 1232
40 % 12 23 1221
30 % 12 23 1228
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44137
95 % 1 1 36978 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 35291
70 % 1 1 31334
50 % 12 23 1221
40 % 12 23 1232
30 % 12 23 1230
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44138
95 % 1 1 36979 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35292
70 % 1 1 31335
50 % 12 22 1318
40 % 12 23 1235
30 % 12 23 1237

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1E6Y 2 B, E METHYL-COENZYME M REDUCTASE I BETA SUBUNIT 2208 2.8.4.1 | Details