Sequence Similarity Clusters for the Entities in PDB 1E6Y

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31540
95 % 1 1 25834 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 24969
70 % 1 1 22690
50 % 12 23 1130
40 % 12 23 1137
30 % 12 23 1131
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33029
95 % 1 1 26668 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 25767
70 % 1 1 23370
50 % 12 23 1132
40 % 12 23 1141
30 % 12 23 1137
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38887
95 % 1 1 30010 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 28960
70 % 1 1 26094
50 % 12 22 1212
40 % 12 22 1224
30 % 12 22 1206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1E6Y 2 B, E METHYL-COENZYME M REDUCTASE I BETA SUBUNIT 2208 2.8.4.1 | Details