Sequence Similarity Clusters for the Entities in PDB 1E6Y

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44139
95 % 1 1 36980 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 35293
70 % 1 1 30259
50 % 12 23 1232
40 % 12 23 1221
30 % 12 23 1228
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44137
95 % 1 1 36978 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 35291
70 % 1 1 31334
50 % 12 23 1221
40 % 12 23 1232
30 % 12 23 1230
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44138
95 % 1 1 36979 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35292
70 % 1 1 31335
50 % 12 22 1318
40 % 12 23 1235
30 % 12 23 1237

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5A0Y 1 A, D METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA IN CHAIN A AND D RESIDUE 257 IS A N1-METHYLHISTIDINE. RESIDUE 271 IS A C5-(S)-METHYLARGININE. RESIDUE 400 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 445 IS A THIOGLYCINE. RESIDUE 450 IS A DIDEHYDROASPARTATE. RESIDUE 452 IS A S-METHYLCYSTEINE 145263 2.8.4.1 | Details
2 1HBN 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145262 2.8.4.1 | Details
3 3POT 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
4 5G0R 1 A, D METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA IN CHAIN A AND D RESIDUE 257 IS A N1-METHYLHISTIDINE. RESIDUE 271 IS A C5-(S)-METHYLARGININE. RESIDUE 400 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 445 IS A THIOGLYCINE. RESIDUE 450 IS A DIDEHYDROASPARTATE. RESIDUE 452 IS A S-METHYLCYSTEINE 145263 2.8.4.1 | Details
5 1MRO 1 A, D METHYL-COENZYME M REDUCTASE MCR-OX-SILENT STATE, ENZYME-SUBSTRATE COMPLEX 145263 2.8.4.1 | Details
6 3M2R 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
7 3M32 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
8 5A8K 1 A, D METHYL-COENZYME M REDUCTASE IN CHAIN A AND D, RESIDUE 257 IS A N1-METHYLHISTIDINE. RESIDUE 271 IS A C5-(S)-METHYLARGININE. RESIDUE 400 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 445 IS A THIOGLYCINE. RESIDUE 452 IS A S-METHYLCYSTEINE 145261 2.8.4.1 | Details
9 3M2U 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
10 3M1V 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
11 3M30 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
12 1E6Y 1 A, D METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA 2208 2.8.4.1 | Details
13 3M2V 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
14 1HBM 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145262 2.8.4.1 | Details
15 5A8W 1 A, D, G, J METHYL-COENZYME M II REDUCTASE IN CHAIN A, D, G AND J, RESIDUE 261 IS A N1-METHYLHISTIDINE. RESIDUE 275 IS A C5-(S)-METHYLARGININE. RESIDUE 403 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 448 IS A THIOGLYCINE. RESIDUE 455 IS A S-METHYLCYSTEINE 145261 2.8.4.1 | Details
16 1HBO 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145262 2.8.4.1 | Details
17 1HBU 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145263 2.8.4.1 | Details
18 5N1Q 1 A, D METHYL-COENZYME M REDUCTASE III FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS SUBUNIT ALPHA IN CHAIN A, D RESIDUE 261 IS A N1-METHYLHISTIDINE. RESIDUE 275 IS A C5-(S)-METHYLARGININE. RESIDUE 403 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 448 IS A THIOGLYCINE. 2186 2.8.4.1 | Details
19 3SQG 1 A, D, G Methyl coenzyme M reductase, alpha subunit 115547 2.8.4.1 | Details
20 5A8R 1 A, D, G, J METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA IN CHAIN A, D, G AND J RESIDUE 260 IS A N1-METHYLHISTIDINE. RESIDUE 274 IS A C5-(S)-METHYLARGININE. RESIDUE 402 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 447 IS A THIOGLYCINE. RESIDUE 452 IS A DIDEHYDROASPARTATE. RESIDUE 454 IS A S-METHYLCYSTEINE 145263 2.8.4.1 | Details
21 5N28 1 A, D Methyl-coenzyme M reductase subunit alpha IN CHAIN A AND D RESIDUE 260 IS A N1-METHYLHISTIDINE. RESIDUE 274 IS A C5-(S)-METHYLARGININE. RESIDUE 402 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 429 IS A POSSIBLE 6-HYDROXY-TRYPTOPHANE. RESIDUE 447 IS A THIOGLYCINE. 213185 2.8.4.1 | Details
22 5N2A 1 A Methyl-coenzyme M reductase subunit alpha IN CHAIN A, RESIDUE 260 IS A N1-METHYLHISTIDINE. RESIDUE 274 IS A C5-(S)-METHYLARGININE. RESIDUE 402 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 429 IS A POSSIBLE 6-HYDROXY-TRYPTOPHANE. RESIDUE 447 IS A THIOGLYCINE. 213185 2.8.4.1 | Details
23 1E6V 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 2320