Sequence Similarity Clusters for the Entities in PDB 1E6Y

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43744
95 % 1 1 36646 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 34975
70 % 1 1 29993
50 % 12 23 1223
40 % 12 23 1217
30 % 12 23 1221
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43742
95 % 1 1 36644 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 34973
70 % 1 1 31067
50 % 12 23 1213
40 % 12 23 1227
30 % 12 23 1224
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE SUBUNIT GAMMA protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43743
95 % 1 1 36645 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34974
70 % 1 1 31068
50 % 12 22 1306
40 % 12 23 1231
30 % 12 23 1230

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5A0Y 1 A, D METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA IN CHAIN A AND D RESIDUE 257 IS A N1-METHYLHISTIDINE. RESIDUE 271 IS A C5-(S)-METHYLARGININE. RESIDUE 400 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 445 IS A THIOGLYCINE. RESIDUE 450 IS A DIDEHYDROASPARTATE. RESIDUE 452 IS A S-METHYLCYSTEINE 145263 2.8.4.1 | Details
2 1HBN 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145262 2.8.4.1 | Details
3 3POT 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
4 5G0R 1 A, D METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA IN CHAIN A AND D RESIDUE 257 IS A N1-METHYLHISTIDINE. RESIDUE 271 IS A C5-(S)-METHYLARGININE. RESIDUE 400 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 445 IS A THIOGLYCINE. RESIDUE 450 IS A DIDEHYDROASPARTATE. RESIDUE 452 IS A S-METHYLCYSTEINE 145263 2.8.4.1 | Details
5 1MRO 1 A, D METHYL-COENZYME M REDUCTASE MCR-OX-SILENT STATE, ENZYME-SUBSTRATE COMPLEX 145263 2.8.4.1 | Details
6 3M2R 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
7 3M32 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
8 5A8K 1 A, D METHYL-COENZYME M REDUCTASE IN CHAIN A AND D, RESIDUE 257 IS A N1-METHYLHISTIDINE. RESIDUE 271 IS A C5-(S)-METHYLARGININE. RESIDUE 400 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 445 IS A THIOGLYCINE. RESIDUE 452 IS A S-METHYLCYSTEINE 145261 2.8.4.1 | Details
9 3M2U 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
10 3M1V 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
11 3M30 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
12 1E6Y 1 A, D METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA 2208 2.8.4.1 | Details
13 3M2V 1 A, D Methyl-coenzyme M reductase I subunit alpha 145263 2.8.4.1 | Details
14 1HBM 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145262 2.8.4.1 | Details
15 5A8W 1 A, D, G, J METHYL-COENZYME M II REDUCTASE IN CHAIN A, D, G AND J, RESIDUE 261 IS A N1-METHYLHISTIDINE. RESIDUE 275 IS A C5-(S)-METHYLARGININE. RESIDUE 403 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 448 IS A THIOGLYCINE. RESIDUE 455 IS A S-METHYLCYSTEINE 145261 2.8.4.1 | Details
16 1HBO 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145262 2.8.4.1 | Details
17 1HBU 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 145263 2.8.4.1 | Details
18 5N1Q 1 A, D METHYL-COENZYME M REDUCTASE III FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS SUBUNIT ALPHA IN CHAIN A, D RESIDUE 261 IS A N1-METHYLHISTIDINE. RESIDUE 275 IS A C5-(S)-METHYLARGININE. RESIDUE 403 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 448 IS A THIOGLYCINE. 2186 2.8.4.1 | Details
19 3SQG 1 A, D, G Methyl coenzyme M reductase, alpha subunit 115547 2.8.4.1 | Details
20 5A8R 1 A, D, G, J METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA IN CHAIN A, D, G AND J RESIDUE 260 IS A N1-METHYLHISTIDINE. RESIDUE 274 IS A C5-(S)-METHYLARGININE. RESIDUE 402 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 447 IS A THIOGLYCINE. RESIDUE 452 IS A DIDEHYDROASPARTATE. RESIDUE 454 IS A S-METHYLCYSTEINE 145263 2.8.4.1 | Details
21 5N28 1 A, D Methyl-coenzyme M reductase subunit alpha IN CHAIN A AND D RESIDUE 260 IS A N1-METHYLHISTIDINE. RESIDUE 274 IS A C5-(S)-METHYLARGININE. RESIDUE 402 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 429 IS A POSSIBLE 6-HYDROXY-TRYPTOPHANE. RESIDUE 447 IS A THIOGLYCINE. 213185 2.8.4.1 | Details
22 5N2A 1 A Methyl-coenzyme M reductase subunit alpha IN CHAIN A, RESIDUE 260 IS A N1-METHYLHISTIDINE. RESIDUE 274 IS A C5-(S)-METHYLARGININE. RESIDUE 402 IS A C2-(S)-METHYLGLUTAMINE. RESIDUE 429 IS A POSSIBLE 6-HYDROXY-TRYPTOPHANE. RESIDUE 447 IS A THIOGLYCINE. 213185 2.8.4.1 | Details
23 1E6V 1 A, D METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT 2320