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Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5
Sequence Clustering and Redundancy Reduction Results
1E6J
Sequence Clusters for the Sequence Entities in PDB 1E6J
Entity #1: Chains: H - IMMUNOGLOBULIN protein, length: 219 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30932
95% 2 2 23856
90% 17 28 739
70% 1181 1528 2
50% 2452 3170 1
40% 2453 3171 1
30% 2875 3753 1
Entity #2: Chains: L - IMMUNOGLOBULIN protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31506
95% 6 6 9511
90% 67 118 89
70% 1042 1332 3
50% 2453 3170 1
40% 2454 3171 1
30% 2876 3753 1
Entity #3: Chains: P - CAPSID PROTEIN P24 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21059
95% 13 26 1
90% 13 27 1
70% 13 27 1
50% 13 27 2
40% 13 27 2
30% 15 29 3
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.