Sequence Similarity Clusters for the Entities in PDB 1E6J

Entity #1 | Chains: H
IMMUNOGLOBULIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39131
95 % 2 2 29960 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 17 25 1115
70 % 1623 2197 1
50 % 3358 4537 1
40 % 3358 4537 1
30 % 3955 5342 1
Entity #2 | Chains: L
IMMUNOGLOBULIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39867
95 % 6 6 12052 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 78 145 141
70 % 1383 1841 2
50 % 3359 4537 1
40 % 3359 4537 1
30 % 3956 5342 1
Entity #3 | Chains: P
CAPSID PROTEIN P24 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14818
95 % 23 43 1 Flexibility: Low
Max RMSD: 11.7, Avg RMSD: 2.0
PDBFlex
90 % 23 44 1
70 % 23 44 3
50 % 23 44 2
40 % 23 44 2
30 % 25 46 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.