Sequence Similarity Clusters for the Entities in PDB 1E6J

Entity #1 | Chains: H
IMMUNOGLOBULIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41723
95 % 2 2 31862 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 19 29 908
70 % 1780 2424 2
50 % 3691 5011 1
40 % 3691 5011 1
30 % 4400 5941 1
Entity #2 | Chains: L
IMMUNOGLOBULIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42505
95 % 6 6 12900 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 80 148 144
70 % 1819 2474 1
50 % 3692 5011 1
40 % 3692 5011 1
30 % 4401 5941 1
Entity #3 | Chains: P
CAPSID PROTEIN P24 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15926
95 % 25 46 1 Flexibility: Low
Max RMSD: 11.7, Avg RMSD: 2.0
PDBFlex
90 % 25 47 1
70 % 25 47 3
50 % 25 47 2
40 % 25 47 2
30 % 28 50 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures