POP-OUT | CLOSE

An Information Portal to 107620 Biological Macromolecular Structures

Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5
Sequence Clustering and Redundancy Reduction Results
1E6J
Sequence Clusters for the Sequence Entities in PDB 1E6J
Entity #1: Chains: H - IMMUNOGLOBULIN protein, length: 219 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31388
95% 2 2 24156
90% 17 28 764
70% 1196 1548 2
50% 2482 3210 1
40% 2483 3211 1
30% 2905 3793 1
Entity #2: Chains: L - IMMUNOGLOBULIN protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31963
95% 6 6 9639
90% 68 119 102
70% 1054 1349 3
50% 2483 3210 1
40% 2484 3211 1
30% 2906 3793 1
Entity #3: Chains: P - CAPSID PROTEIN P24 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21379
95% 13 26 1
90% 13 27 1
70% 13 27 1
50% 13 27 2
40% 13 27 2
30% 15 29 3
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.