Sequence Similarity Clusters for the Entities in PDB 1E6J

Entity #1 | Chains: H
IMMUNOGLOBULIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41165
95 % 2 2 31454 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 19 29 897
70 % 1737 2366 2
50 % 3602 4892 1
40 % 3602 4892 1
30 % 4251 5759 1
Entity #2 | Chains: L
IMMUNOGLOBULIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41937
95 % 6 6 12689 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 80 148 140
70 % 1776 2416 1
50 % 3603 4892 1
40 % 3603 4892 1
30 % 4252 5759 1
Entity #3 | Chains: P
CAPSID PROTEIN P24 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15645
95 % 25 46 1 Flexibility: Low
Max RMSD: 11.7, Avg RMSD: 2.0
PDBFlex
90 % 25 47 1
70 % 25 47 3
50 % 25 47 2
40 % 25 47 2
30 % 28 50 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures