Sequence Similarity Clusters for the Entities in PDB 1E6J

Entity #1 | Chains: H
IMMUNOGLOBULIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40341
95 % 2 2 30872 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 19 29 871
70 % 1669 2282 2
50 % 3459 4717 1
40 % 3459 4717 1
30 % 4097 5571 1
Entity #2 | Chains: L
IMMUNOGLOBULIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41096
95 % 6 6 12460 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 78 145 144
70 % 1705 2329 1
50 % 3460 4717 1
40 % 3460 4717 1
30 % 4098 5571 1
Entity #3 | Chains: P
CAPSID PROTEIN P24 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15311
95 % 25 45 1 Flexibility: Low
Max RMSD: 11.7, Avg RMSD: 2.0
PDBFlex
90 % 25 46 1
70 % 25 46 3
50 % 25 46 2
40 % 25 46 2
30 % 28 49 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.