Sequence Similarity Clusters for the Entities in PDB 1E6D

Entity #1 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 96 250
95 % 10 97 346 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 10 97 372
70 % 10 97 408
50 % 10 97 482
40 % 17 129 370
30 % 17 129 370
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 68 433
95 % 10 97 345 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 10 97 371
70 % 10 97 407
50 % 17 129 340
40 % 17 129 369
30 % 17 129 369
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54747
95 % 10 97 344 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 10 97 370
70 % 10 97 405
50 % 17 129 339
40 % 17 129 368
30 % 17 129 368

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.