Sequence Similarity Clusters for the Entities in PDB 1E6D

Entity #1 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 96 339
95 % 10 97 419 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 10 97 458
70 % 10 97 492
50 % 10 97 538
40 % 18 131 443
30 % 18 131 445
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 90 374
95 % 10 97 412 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 10 97 451
70 % 10 97 484
50 % 18 131 418
40 % 18 131 442
30 % 18 131 443
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26813
95 % 10 97 415 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 10 97 454
70 % 10 97 487
50 % 18 131 419
40 % 18 131 441
30 % 18 131 442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures