Sequence Similarity Clusters for the Entities in PDB 1E6D

Entity #1 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 96 256
95 % 10 97 353 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 10 97 377
70 % 10 97 413
50 % 10 97 489
40 % 17 129 377
30 % 17 129 377
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 68 434
95 % 10 97 352 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 10 97 376
70 % 10 97 412
50 % 17 129 349
40 % 17 129 376
30 % 17 129 376
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55534
95 % 10 97 351 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 10 97 375
70 % 10 97 410
50 % 17 129 348
40 % 17 129 375
30 % 17 129 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.