Sequence Similarity Clusters for the Entities in PDB 1E50

Entity #1 | Chains: A,C,E,G,Q,R
CORE-BINDING FACTOR ALPHA SUBUNIT protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3139
95 % 9 13 2416 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 9 13 2482
70 % 9 13 2474
50 % 9 13 2467
40 % 9 13 2437
30 % 9 13 2321
Entity #2 | Chains: B,D,F,H
CORE-BINDING FACTOR CBF-BETA protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13954
95 % 9 13 2645 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 9 13 2698
70 % 9 13 2686
50 % 9 13 2652
40 % 9 13 2597
30 % 9 13 2454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures