Sequence Similarity Clusters for the Entities in PDB 1E4E

Entity #1 | Chains: A
VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56422
95 % 1 2 28758 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 27754
70 % 1 2 25061
50 % 1 3 7832
40 % 2 4 5926
30 % 34 45 485
Entity #2 | Chains: B
VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56423
95 % 2 2 28758 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 27754
70 % 2 2 25061
50 % 2 3 7832
40 % 3 4 5926
30 % 35 45 485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures