Sequence Similarity Clusters for the Entities in PDB 1E3O

Entity #1 | Chains: A
5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*A)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*TP*CP*CP*TP*CP*AP*TP*GP*CP*AP*T)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63525
95 % 1 6 9450 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.8
PDBFlex
90 % 1 6 9347
70 % 1 6 8949
50 % 1 9 4831
40 % 1 10 2878
30 % 1 10 2689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.