Sequence Similarity Clusters for the Entities in PDB 1E3D

Entity #1 | Chains: A,C
[NIFE] HYDROGENASE SMALL SUBUNIT protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37286
95 % 1 1 29029
90 % 1 1 28027
70 % 18 18 3244
50 % 29 47 491
40 % 38 59 450
30 % 38 59 451
Entity #2 | Chains: B,D
[NIFE] HYDROGENASE LARGE SUBUNIT protein, length: 542 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31145
95 % 1 1 25457
90 % 1 1 24620
70 % 1 1 22423
50 % 25 42 562
40 % 44 65 397
30 % 58 83 320

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.