Sequence Similarity Clusters for the Entities in PDB 1E3D

Entity #1 | Chains: A,C
[NIFE] HYDROGENASE SMALL SUBUNIT protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37820
95 % 1 1 29439 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 28419
70 % 18 18 3299
50 % 29 47 499
40 % 38 59 459
30 % 38 59 458
Entity #2 | Chains: B,D
[NIFE] HYDROGENASE LARGE SUBUNIT protein, length: 542 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31619
95 % 1 1 25833
90 % 1 1 24974
70 % 1 1 22709
50 % 25 42 574
40 % 44 65 400
30 % 58 83 327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.