Sequence Similarity Clusters for the Entities in PDB 1E3D

Entity #1 | Chains: A,C
[NIFE] HYDROGENASE SMALL SUBUNIT protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38582
95 % 1 1 29991 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 28932
70 % 18 18 3382
50 % 29 47 509
40 % 38 59 467
30 % 38 59 462
Entity #2 | Chains: B,D
[NIFE] HYDROGENASE LARGE SUBUNIT protein, length: 542 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32256
95 % 1 1 26319
90 % 1 1 25425
70 % 1 1 23085
50 % 25 42 586
40 % 44 65 423
30 % 58 83 340

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures