Sequence Similarity Clusters for the Entities in PDB 1E3D

Entity #1 | Chains: A,C
[NIFE] HYDROGENASE SMALL SUBUNIT protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39153
95 % 1 1 30423 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 29344
70 % 18 18 3436
50 % 29 47 516
40 % 40 62 457
30 % 40 62 454
Entity #2 | Chains: B,D
[NIFE] HYDROGENASE LARGE SUBUNIT protein, length: 542 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32740
95 % 1 1 26703
90 % 1 1 25792
70 % 1 1 23401
50 % 25 42 595
40 % 49 71 406
30 % 63 89 321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures