Sequence Similarity Clusters for the Entities in PDB 1E3D

Entity #1 | Chains: A,C
[NIFE] HYDROGENASE SMALL SUBUNIT protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36678
95 % 1 1 28561 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 27582
70 % 18 18 3201
50 % 29 47 485
40 % 38 59 441
30 % 38 59 440
Entity #2 | Chains: B,D
[NIFE] HYDROGENASE LARGE SUBUNIT protein, length: 542 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30584
95 % 1 1 24998 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 24181
70 % 1 1 22089
50 % 25 42 553
40 % 42 63 402
30 % 56 81 326

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.