Sequence Similarity Clusters for the Entities in PDB 1E28

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57367
95 % 125 135 226 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 189 201 135
70 % 629 719 6
50 % 631 724 6
40 % 671 775 10
30 % 743 899 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 538 618 2
95 % 577 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 586 671 4
70 % 768 916 4
50 % 782 938 3
40 % 782 938 7
30 % 782 938 12
Entity #3 | Chains: C
PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures