Sequence Similarity Clusters for the Entities in PDB 1E28

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17664
95 % 128 138 230 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 192 204 137
70 % 645 740 6
50 % 656 754 7
40 % 690 806 9
30 % 766 930 12
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 577 666 2
95 % 590 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 599 690 4
70 % 788 944 4
50 % 802 966 3
40 % 802 966 6
30 % 802 966 9
Entity #3 | Chains: C
PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures