Sequence Similarity Clusters for the Entities in PDB 1E27

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26141
95 % 102 134 217 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 147 196 139
70 % 364 684 6
50 % 365 689 6
40 % 387 739 10
30 % 412 856 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 334 593 2
95 % 362 636 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 365 645 4
70 % 436 875 4
50 % 444 897 4
40 % 444 897 9
30 % 444 897 14
Entity #3 | Chains: C
HIV-1 PEPTIDE (LPPVVAKEI) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.