Sequence Similarity Clusters for the Entities in PDB 1E1R

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 29 301
95 % 9 41 277 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 9 41 289
70 % 10 59 167
50 % 11 71 168
40 % 11 71 183
30 % 11 71 200
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 40 206
95 % 9 42 278 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 9 42 290
70 % 11 72 139
50 % 11 72 169
40 % 11 72 184
30 % 11 72 201
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 39 881
95 % 9 39 1188 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.4
PDBFlex
90 % 9 39 1215
70 % 9 41 1189
50 % 9 41 1245
40 % 9 65 629
30 % 9 65 619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.