Sequence Similarity Clusters for the Entities in PDB 1E1C

Entity #1 | Chains: A,C
METHYLMALONYL-COA MUTASE ALPHA CHAIN protein, length: 727 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31934
95 % 6 8 4463 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.1
PDBFlex
90 % 6 8 4500
70 % 6 8 4410
50 % 9 11 3083
40 % 9 11 3029
30 % 9 11 2836
Entity #2 | Chains: B,D
METHYLMALONYL-COA MUTASE BETA CHAIN protein, length: 637 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3668
95 % 6 8 4468 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 6 8 4506
70 % 6 8 4416
50 % 6 8 4234
40 % 6 8 4043
30 % 6 8 3750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures